Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   ACLKMZ_RS01825 Genome accession   NZ_CP183909
Coordinates   389672..391783 (+) Length   703 a.a.
NCBI ID   WP_411691470.1    Uniprot ID   -
Organism   Acinetobacter gandensis strain M1_NDM_tet(X3)     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 384672..396783
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLKMZ_RS01805 - 386623..387681 (+) 1059 Protein_340 pilus assembly protein PilM -
  ACLKMZ_RS01810 pilN 387681..388367 (+) 687 WP_180056230.1 PilN domain-containing protein Machinery gene
  ACLKMZ_RS01815 pilO 388364..389086 (+) 723 WP_411691466.1 type 4a pilus biogenesis protein PilO Machinery gene
  ACLKMZ_RS01820 pilP 389083..389610 (+) 528 WP_411691467.1 pilus assembly protein PilP Machinery gene
  ACLKMZ_RS01825 pilQ 389672..391783 (+) 2112 WP_411691470.1 type IV pilus secretin PilQ Machinery gene
  ACLKMZ_RS01830 aroK 391820..392362 (+) 543 WP_067763002.1 shikimate kinase AroK -
  ACLKMZ_RS01835 aroB 392382..393461 (+) 1080 WP_180056233.1 3-dehydroquinate synthase -
  ACLKMZ_RS01840 - 393473..394318 (+) 846 WP_180056234.1 hypothetical protein -

Sequence

Protein


Download         Length: 703 a.a.        Molecular weight: 76534.63 Da        Isoelectric Point: 6.1312

>NTDB_id=1107159 ACLKMZ_RS01825 WP_411691470.1 389672..391783(+) (pilQ) [Acinetobacter gandensis strain M1_NDM_tet(X3)]
MNRMFRQFSMGAVAMAIMQVANAQVSVTNIVPMQIPGQGTEIRVMFNGLPPQPQAYQLDQPSRLVLDFDKAQQNLKQSSI
PVATNEATSVDVTSDAQRARLTVNLANAGTFTTRVEGNTFILKINSAQLATLSQPVVQRQQQGISNIGFQRGSNGEGQVV
VDLLGGNTPVDVQQQGSKIVIRTLGNKVPAHLTRRLNVNDFATPVASVDAHNDGGNGIITIQSTGSYEYMAYQSDNKLTV
SLKRPEDKNPLRPKAANHYTGKKISLDFQDIEVRRVLQLLADFTEINMVAADTVQGNITLRLKDVPWDQALDIVLKTKNL
DKRRNGNVIWIAPVTELIKAEEEEAKALRQSVKLSPLQTEYLTLSYAKAADIEKLITQSKTAGNSGSSNSGNSDEDRGNL
LSPRGTISADTRTNTLIINDTALNIDQIRKMVDLLDVSVKQVMVEARIVKASTDFTKEMGVKWGLLSQGINQNDHLLVGG
SDTTLWDLKTPDDDGKYTIQRPSNLNVDLGVTTAGASRIAFGLISLSDFMLDLELSALQADGYGEVISTPKVLTADKQQA
KVASGQEIPYQSVTGTGSNATSSTEFKEALLSLDVTPSITPDGKVQMKLNIKSDSPAGYAQNGEIILNKNEINTDVLVNN
GETVVLGGIFNQETQSKQTKVPFLGDIPYVGRLFRKDLKSDAKNELLIFVTPRIVNDSVTRNH

Nucleotide


Download         Length: 2112 bp        

>NTDB_id=1107159 ACLKMZ_RS01825 WP_411691470.1 389672..391783(+) (pilQ) [Acinetobacter gandensis strain M1_NDM_tet(X3)]
ATGAATCGTATGTTTCGTCAGTTTTCGATGGGTGCTGTGGCAATGGCGATTATGCAAGTGGCCAATGCACAGGTAAGTGT
AACGAATATTGTGCCAATGCAAATTCCTGGGCAAGGCACTGAAATTCGTGTGATGTTTAATGGGTTACCACCGCAGCCTC
AGGCGTATCAGTTAGATCAGCCTTCACGTTTGGTCTTGGACTTTGATAAAGCACAACAAAATTTAAAGCAAAGTTCAATT
CCTGTAGCAACAAATGAAGCTACTTCAGTTGATGTTACTTCAGACGCTCAGCGTGCGCGTTTAACAGTTAATTTAGCAAA
TGCCGGTACCTTTACGACCCGTGTTGAAGGTAATACCTTTATCCTAAAAATTAATTCAGCACAGTTAGCAACCTTGTCTC
AACCAGTCGTTCAGCGTCAACAGCAAGGTATTTCAAATATTGGGTTCCAGCGTGGGTCTAATGGTGAAGGTCAAGTTGTT
GTGGATTTATTGGGGGGTAACACACCTGTCGATGTACAACAGCAAGGTAGCAAAATTGTGATTCGTACTTTAGGAAATAA
AGTACCTGCACACTTAACGCGTCGTTTAAATGTAAATGATTTTGCAACACCAGTGGCTTCAGTAGATGCGCATAATGATG
GTGGAAACGGTATCATCACGATTCAATCAACAGGCAGCTATGAATATATGGCATATCAGTCAGACAATAAATTGACTGTG
AGTTTAAAGCGACCTGAAGATAAAAATCCTTTACGCCCTAAAGCAGCAAACCATTACACAGGTAAGAAAATTTCTTTAGA
TTTCCAAGATATTGAAGTGCGTCGAGTACTACAGTTGTTGGCAGATTTCACTGAAATTAATATGGTGGCTGCGGATACTG
TACAAGGTAATATTACACTACGCTTAAAAGATGTGCCTTGGGATCAAGCGTTGGATATCGTGCTTAAGACGAAGAATTTA
GATAAACGTCGTAATGGTAATGTGATTTGGATCGCTCCAGTTACTGAGCTGATCAAAGCTGAAGAAGAGGAAGCAAAAGC
TTTACGTCAAAGTGTTAAGCTATCTCCACTACAAACTGAATATTTGACCCTAAGTTATGCAAAAGCAGCAGATATTGAAA
AACTCATTACGCAGTCAAAAACTGCTGGTAACAGCGGTTCGTCAAATAGTGGTAATTCAGATGAAGATCGAGGAAACTTA
TTAAGTCCTCGAGGTACCATCTCTGCGGACACTCGAACCAATACATTGATTATCAATGATACAGCATTGAATATTGATCA
AATTCGTAAAATGGTCGATTTACTTGATGTATCTGTTAAACAGGTGATGGTTGAAGCTCGTATTGTTAAAGCATCTACTG
ACTTTACGAAGGAAATGGGTGTCAAGTGGGGCTTGTTATCACAAGGGATTAATCAAAATGATCATTTGTTAGTAGGTGGT
AGTGATACAACGCTTTGGGATCTTAAAACTCCTGATGATGATGGTAAATATACTATTCAACGTCCAAGTAATTTAAACGT
GGATCTAGGTGTAACGACTGCGGGAGCAAGCCGTATTGCCTTTGGTTTAATCAGTTTGTCAGACTTTATGTTGGATCTGG
AATTATCAGCATTGCAAGCAGATGGTTATGGTGAGGTGATTTCTACACCAAAAGTACTGACTGCAGATAAGCAGCAAGCG
AAAGTGGCTTCGGGGCAAGAAATTCCTTATCAATCAGTAACTGGTACGGGGTCAAATGCTACGTCTTCTACAGAATTTAA
GGAAGCTTTACTTAGTCTCGATGTGACACCAAGTATTACCCCTGACGGTAAAGTACAGATGAAGCTCAATATTAAAAGTG
ATTCGCCAGCAGGTTATGCACAAAATGGTGAGATCATTTTGAATAAAAATGAAATCAATACTGATGTCCTAGTAAATAAT
GGTGAAACAGTAGTATTGGGTGGAATTTTTAATCAGGAAACTCAAAGTAAGCAAACAAAAGTACCATTTTTAGGAGACAT
TCCTTATGTTGGTCGCTTATTCCGTAAAGATTTAAAAAGTGATGCTAAAAATGAGTTGCTGATTTTTGTTACCCCACGAA
TTGTTAATGACAGTGTTACTAGAAATCATTAA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(537-695)

Secretin and TonB N terminus short domain (STN)

(291-333)

AMIN domain (AMIN)

(40-110)

Bacterial type II/III secretion system short domain (Secretin_N)

(361-441)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

74.345

100

0.767
  pilQ Acinetobacter baumannii strain A118

74.207

100

0.765
  comQ Acinetobacter baylyi ADP1

73.136

100

0.74
  pilQ Pseudomonas aeruginosa PAK

42

99.573

0.418
  pilQ Legionella pneumophila strain Lp02

37.01

98.009

0.363
  pilQ Legionella pneumophila strain ERS1305867

37.01

98.009

0.363

Multiple sequence alignment