Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   ACLKM0_RS01105 Genome accession   NZ_CP183907
Coordinates   235557..237695 (+) Length   712 a.a.
NCBI ID   WP_286422881.1    Uniprot ID   -
Organism   Acinetobacter indicus strain M3_NDM     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 230557..242695
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLKM0_RS01085 pilM 232560..233618 (+) 1059 WP_104505685.1 pilus assembly protein PilM Machinery gene
  ACLKM0_RS01090 pilN 233618..234253 (+) 636 WP_005180516.1 PilN domain-containing protein Machinery gene
  ACLKM0_RS01095 pilO 234250..234969 (+) 720 WP_005180513.1 type 4a pilus biogenesis protein PilO Machinery gene
  ACLKM0_RS01100 pilP 234969..235496 (+) 528 WP_045795346.1 pilus assembly protein PilP Machinery gene
  ACLKM0_RS01105 pilQ 235557..237695 (+) 2139 WP_286422881.1 type IV pilus secretin PilQ Machinery gene
  ACLKM0_RS01110 aroK 237732..238274 (+) 543 WP_075167858.1 shikimate kinase AroK -
  ACLKM0_RS01115 aroB 238297..239379 (+) 1083 WP_168389734.1 3-dehydroquinate synthase -
  ACLKM0_RS01120 - 239392..240228 (+) 837 WP_104492383.1 hypothetical protein -

Sequence

Protein


Download         Length: 712 a.a.        Molecular weight: 76900.11 Da        Isoelectric Point: 5.0523

>NTDB_id=1107113 ACLKM0_RS01105 WP_286422881.1 235557..237695(+) (pilQ) [Acinetobacter indicus strain M3_NDM]
MNNLFRQFSMGAVAMAVMQVANAQVSITNIVPMQIPGQGTEIRVMFNGLPPQPAAYQLEQPSRLVLDFDKAQQTLKQASI
PVATREASSVDVSSDAQRARLTVNLAEAGAFTTRVEGNTFILKINSTQAAVTPVTVQQTAQGVSNIGFQRGAEGEGQVVI
DLAGSNTPVDVQQQGSKIIVRTLGNKIPAHLARRLNVNDFATPVSTIDAQNDGGNGIITIQSAGSYEYMAYQAENKLTIS
LKRPVDKNPFKPRAAQSYTGKKISLDFQDIEVRRVLQLLADFTGINMVAADTVQGNITLRLKDVPWDQALDIILKTKNLD
KRRNGNVIWIAPVAELIKAEEEEAKAIAQSIKLAPLQTEYIQLNYAKAADIEKLITDGKNASNSRGGTNSGSGADPLGDS
VGSLLSPRGTVSVDPRTNTLIINDTAQKIDQIRGMIDLLDVSVKQVMIEARIVRATTDFTKEMGVKWGILSQGIMNNNHL
LVGGSDTTLWNLREPEFDDERGGYTYEIERPQNLNVDLGVTSPGASRIAFGLISLSDFMLDLELSALQADGYGEVISTPK
VLTADKQQAKVASGTQIPYQSAEGGGVNAVSTTEFIDATLSLDVTPSITPDGKVQMNLNITSDSPGAPTPTGQLTINKNS
INTNVLVDNGETVVLGGIFEQQTANQQTKVPFLGDIPYLGRLFRKDIKSDNKRELLIFVTPRIVNDSVSRNH

Nucleotide


Download         Length: 2139 bp        

>NTDB_id=1107113 ACLKM0_RS01105 WP_286422881.1 235557..237695(+) (pilQ) [Acinetobacter indicus strain M3_NDM]
ATGAACAATTTGTTCCGTCAGTTTTCAATGGGCGCTGTTGCGATGGCCGTCATGCAAGTGGCCAATGCGCAGGTCAGCAT
TACCAATATTGTACCAATGCAAATTCCAGGACAAGGTACTGAAATTCGTGTCATGTTCAATGGCTTGCCACCTCAGCCTG
CAGCCTATCAGCTTGAGCAGCCATCACGTTTGGTGCTGGATTTTGATAAAGCCCAGCAGACCTTAAAACAGGCCAGCATT
CCGGTTGCGACTCGGGAAGCCAGCTCGGTTGATGTCAGTTCCGATGCCCAGCGTGCACGTTTAACGGTTAATCTGGCTGA
AGCGGGTGCTTTTACTACCCGTGTTGAAGGCAATACTTTTATTCTTAAAATTAACAGCACTCAGGCAGCCGTAACGCCAG
TGACGGTACAGCAGACGGCTCAAGGTGTATCGAATATCGGCTTTCAGCGCGGTGCAGAAGGGGAAGGTCAGGTAGTAATT
GACCTGGCAGGCAGCAACACCCCGGTCGATGTACAACAGCAAGGCAGTAAAATTATTGTCCGTACCTTGGGCAATAAAAT
TCCTGCACATCTGGCGCGCCGTTTAAACGTCAATGATTTTGCCACCCCGGTATCTACCATTGATGCGCAAAATGATGGTG
GCAATGGGATAATTACTATTCAGTCTGCGGGAAGCTATGAATATATGGCGTATCAGGCAGAAAATAAACTGACCATCAGT
CTGAAACGTCCGGTAGATAAGAACCCATTCAAACCGCGTGCAGCACAAAGCTATACCGGCAAAAAGATTTCTTTAGATTT
TCAGGATATTGAAGTGCGTCGTGTGCTGCAGTTACTGGCTGATTTTACCGGAATTAACATGGTTGCCGCCGATACGGTAC
AAGGCAATATCACCTTACGTCTCAAAGATGTGCCGTGGGATCAGGCACTAGATATTATTTTAAAAACCAAAAATCTGGAT
AAACGCCGTAATGGTAATGTGATCTGGATTGCACCCGTCGCAGAGCTGATCAAGGCCGAAGAAGAAGAAGCTAAAGCGAT
TGCACAAAGTATTAAACTGGCACCGCTGCAAACCGAATATATCCAATTGAATTATGCCAAGGCTGCTGATATCGAGAAAC
TGATTACTGATGGTAAAAACGCATCCAATTCTCGAGGCGGCACAAATTCGGGTTCTGGGGCAGATCCACTTGGTGATAGC
GTCGGTAGTCTGCTCAGCCCACGTGGTACGGTGTCGGTTGATCCACGAACCAACACCCTGATTATTAATGATACTGCACA
AAAAATTGACCAGATTCGCGGCATGATTGACTTGCTGGATGTATCGGTGAAACAGGTGATGATTGAAGCGCGTATTGTGC
GTGCCACCACTGACTTCACCAAAGAGATGGGGGTCAAGTGGGGCATCCTGTCACAAGGGATCATGAATAATAACCATCTT
CTGGTCGGTGGTAGTGATACCACACTGTGGAATTTACGTGAGCCGGAATTTGACGATGAGCGTGGTGGTTATACCTATGA
AATTGAACGTCCACAAAACTTGAATGTCGATTTGGGGGTCACCAGCCCAGGTGCGAGCCGGATTGCTTTTGGTCTCATCA
GCCTGTCTGACTTTATGCTGGATTTAGAACTGTCTGCCCTACAAGCTGATGGTTATGGTGAAGTGATTTCGACACCGAAA
GTACTGACTGCTGATAAGCAACAGGCCAAAGTGGCTTCAGGTACGCAGATTCCGTATCAGTCTGCTGAAGGAGGCGGTGT
CAATGCGGTATCCACCACAGAGTTTATTGATGCAACTTTAAGTCTGGATGTTACGCCAAGCATTACCCCGGATGGTAAAG
TGCAGATGAACCTGAATATCACCAGTGATAGTCCGGGAGCACCAACGCCGACCGGTCAGCTGACGATTAACAAAAACTCG
ATCAATACCAATGTACTGGTCGATAATGGTGAAACCGTCGTGCTCGGTGGTATTTTTGAGCAGCAGACAGCCAATCAGCA
AACCAAAGTGCCATTCCTGGGGGATATTCCGTATTTAGGCCGTTTATTCCGTAAAGATATTAAATCGGACAATAAACGTG
AGTTGCTGATTTTTGTGACACCACGAATTGTTAATGACAGTGTTTCAAGAAATCATTAA

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(359-445)

Secretin and TonB N terminus short domain (STN)

(290-332)

Bacterial type II and III secretion system protein (Secretin)

(546-704)

AMIN domain (AMIN)

(40-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

76.593

100

0.777
  pilQ Acinetobacter baumannii strain A118

76.454

100

0.775
  comQ Acinetobacter baylyi ADP1

74.09

100

0.743
  pilQ Pseudomonas aeruginosa PAK

40.228

98.455

0.396
  pilQ Legionella pneumophila strain ERS1305867

38.462

100

0.386
  pilQ Legionella pneumophila strain Lp02

38.462

100

0.386

Multiple sequence alignment