Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   ACLKM0_RS01085 Genome accession   NZ_CP183907
Coordinates   232560..233618 (+) Length   352 a.a.
NCBI ID   WP_104505685.1    Uniprot ID   -
Organism   Acinetobacter indicus strain M3_NDM     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 227560..238618
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLKM0_RS01070 mraY 227783..228901 (+) 1119 WP_005180530.1 phospho-N-acetylmuramoyl-pentapeptide- transferase -
  ACLKM0_RS01075 - 228967..229770 (+) 804 WP_411688601.1 putative RNA methyltransferase -
  ACLKM0_RS01080 ponA 229812..232388 (-) 2577 WP_411686674.1 penicillin-binding protein PBP1a -
  ACLKM0_RS01085 pilM 232560..233618 (+) 1059 WP_104505685.1 pilus assembly protein PilM Machinery gene
  ACLKM0_RS01090 pilN 233618..234253 (+) 636 WP_005180516.1 PilN domain-containing protein Machinery gene
  ACLKM0_RS01095 pilO 234250..234969 (+) 720 WP_005180513.1 type 4a pilus biogenesis protein PilO Machinery gene
  ACLKM0_RS01100 pilP 234969..235496 (+) 528 WP_045795346.1 pilus assembly protein PilP Machinery gene
  ACLKM0_RS01105 pilQ 235557..237695 (+) 2139 WP_286422881.1 type IV pilus secretin PilQ Machinery gene
  ACLKM0_RS01110 aroK 237732..238274 (+) 543 WP_075167858.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 38981.65 Da        Isoelectric Point: 4.5587

>NTDB_id=1107109 ACLKM0_RS01085 WP_104505685.1 232560..233618(+) (pilM) [Acinetobacter indicus strain M3_NDM]
MRRLYRKPSKGLIGVDISSTSVKLLELSVKNDRYWVESYALVPLPEGSVVEKNILNPEAVGDALERAFNLANTPTTAAAL
AIPTSMVISKTIEMDADMTDDEREVQIRMDAEQYIPFPLDEVSLDFEVLPDRLANPNRVNVLLVATRLENVESRCEAIEL
AGLTPKVADVESFAIENAFKVFADTLPMGVNTIGVLDIGHTMTTLSVLKDNKIIYTREQVFGGKQLTQEIQNRYGLSFEE
AGRAKKSRTLPDDYDIEVLEPFLEAVVQQAARSLQFFFSSSQFNEIDHILLAGGNANIPGLAKLLQQKLGYRVTIANPFL
QMGFSSKIDIKRIESDASSLMVACGLALRSFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=1107109 ACLKM0_RS01085 WP_104505685.1 232560..233618(+) (pilM) [Acinetobacter indicus strain M3_NDM]
GTGCGCAGGTTATATCGTAAACCGAGTAAGGGGTTAATAGGTGTAGATATTAGTTCTACTTCTGTTAAGTTATTGGAGCT
CTCTGTAAAGAATGATCGTTACTGGGTGGAAAGTTACGCCTTGGTACCGCTCCCAGAGGGCAGTGTGGTTGAGAAAAATA
TTCTGAATCCTGAAGCTGTAGGGGATGCGCTCGAGCGTGCCTTTAATTTGGCCAATACACCGACAACAGCTGCCGCTTTA
GCGATTCCAACCTCAATGGTAATTAGCAAGACCATTGAGATGGATGCCGATATGACGGATGACGAACGTGAAGTTCAAAT
CCGGATGGATGCAGAGCAATATATTCCTTTCCCATTAGATGAAGTTAGCCTGGACTTTGAGGTGCTGCCTGATCGTCTGG
CCAATCCAAACCGGGTCAATGTTTTGCTGGTGGCGACACGACTGGAAAATGTCGAGAGTCGCTGTGAAGCGATTGAACTG
GCCGGTTTAACCCCAAAAGTGGCAGATGTCGAAAGCTTTGCCATTGAAAATGCCTTTAAAGTCTTCGCCGATACCTTGCC
GATGGGGGTAAATACCATTGGTGTGTTAGACATTGGTCATACTATGACCACGCTGTCGGTACTCAAAGACAATAAAATTA
TCTATACCCGCGAGCAGGTCTTTGGTGGCAAGCAGCTGACCCAGGAAATCCAGAACCGTTATGGTCTGTCCTTTGAAGAA
GCCGGCCGCGCCAAGAAAAGCCGTACCTTGCCAGATGATTATGATATTGAAGTGTTGGAGCCATTCCTTGAGGCGGTGGT
GCAGCAGGCGGCACGTTCGCTGCAGTTCTTCTTCTCCTCATCGCAGTTTAATGAAATTGACCATATTCTGCTGGCCGGTG
GGAATGCCAATATTCCAGGCCTGGCCAAGCTACTACAGCAAAAACTGGGTTACCGCGTCACCATTGCCAATCCGTTTTTA
CAGATGGGTTTCTCCTCCAAAATTGATATTAAAAGAATTGAAAGCGATGCCTCTTCATTGATGGTGGCATGTGGCTTGGC
ATTGAGGAGTTTTGATTAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(14-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Acinetobacter baumannii D1279779

84.659

100

0.847
  comM Acinetobacter nosocomialis M2

84.659

100

0.847
  comM Acinetobacter baylyi ADP1

78.693

100

0.787
  pilM Legionella pneumophila strain ERS1305867

41.243

100

0.415

Multiple sequence alignment