Detailed information
Bioinformatically predicted
Overview
| Name | comEA | Type | Machinery gene |
| Locus tag | ACGHCW_RS11585 | Genome accession | NZ_AP031614 |
| Coordinates | 2509785..2510084 (-) | Length | 99 a.a. |
| NCBI ID | WP_390501902.1 | Uniprot ID | - |
| Organism | Vibrio harveyi strain TUMSAT-2019 | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2504785..2515084
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACGHCW_RS11560 (VHTUMSATKI_22060) | - | 2505189..2506403 (+) | 1215 | WP_005446588.1 | pyridoxal phosphate-dependent aminotransferase | - |
| ACGHCW_RS11565 (VHTUMSATKI_22070) | yfbR | 2506487..2507071 (+) | 585 | WP_026000131.1 | 5'-deoxynucleotidase | - |
| ACGHCW_RS11570 (VHTUMSATKI_22080) | - | 2507075..2508409 (+) | 1335 | WP_045490409.1 | anti-phage deoxyguanosine triphosphatase | - |
| ACGHCW_RS11575 (VHTUMSATKI_22090) | - | 2508460..2509077 (-) | 618 | WP_045490412.1 | tRNA-uridine aminocarboxypropyltransferase | - |
| ACGHCW_RS11580 | rrtA | 2509081..2509632 (+) | 552 | WP_005446582.1 | rhombosortase | - |
| ACGHCW_RS11585 (VHTUMSATKI_22110) | comEA | 2509785..2510084 (-) | 300 | WP_390501902.1 | ComEA family DNA-binding protein | Machinery gene |
| ACGHCW_RS11590 (VHTUMSATKI_22120) | ppiD | 2510230..2512089 (-) | 1860 | WP_390501903.1 | peptidylprolyl isomerase | - |
| ACGHCW_RS11595 (VHTUMSATKI_22130) | - | 2512305..2512577 (-) | 273 | WP_005430934.1 | HU family DNA-binding protein | - |
Sequence
Protein
Download Length: 99 a.a. Molecular weight: 10910.76 Da Isoelectric Point: 8.9385
>NTDB_id=110676 ACGHCW_RS11585 WP_390501902.1 2509785..2510084(-) (comEA) [Vibrio harveyi strain TUMSAT-2019]
MKWMLTLCLLLLAPMSWAEESKSANTKAAKYEGIEITVNVNTASAQEIATMLKGIGEKKAKDIVEYRNEHGAFKTVADLT
KVKGIGDATVKKNEERILL
MKWMLTLCLLLLAPMSWAEESKSANTKAAKYEGIEITVNVNTASAQEIATMLKGIGEKKAKDIVEYRNEHGAFKTVADLT
KVKGIGDATVKKNEERILL
Nucleotide
Download Length: 300 bp
>NTDB_id=110676 ACGHCW_RS11585 WP_390501902.1 2509785..2510084(-) (comEA) [Vibrio harveyi strain TUMSAT-2019]
ATGAAATGGATGTTAACACTGTGCTTATTACTCTTAGCACCGATGAGCTGGGCAGAAGAGAGTAAGTCGGCTAACACAAA
AGCAGCTAAGTACGAAGGTATCGAGATTACGGTAAACGTAAATACAGCTTCAGCGCAAGAGATTGCCACCATGCTAAAGG
GTATTGGTGAAAAGAAAGCGAAAGATATCGTCGAATATCGTAATGAACACGGTGCTTTTAAAACCGTTGCGGATCTGACC
AAAGTGAAGGGCATTGGCGATGCCACGGTGAAAAAGAATGAAGAGCGTATTTTGTTGTAA
ATGAAATGGATGTTAACACTGTGCTTATTACTCTTAGCACCGATGAGCTGGGCAGAAGAGAGTAAGTCGGCTAACACAAA
AGCAGCTAAGTACGAAGGTATCGAGATTACGGTAAACGTAAATACAGCTTCAGCGCAAGAGATTGCCACCATGCTAAAGG
GTATTGGTGAAAAGAAAGCGAAAGATATCGTCGAATATCGTAATGAACACGGTGCTTTTAAAACCGTTGCGGATCTGACC
AAAGTGAAGGGCATTGGCGATGCCACGGTGAAAAAGAATGAAGAGCGTATTTTGTTGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comEA | Vibrio campbellii strain DS40M4 |
81.818 |
100 |
0.818 |
| comEA | Vibrio parahaemolyticus RIMD 2210633 |
74.747 |
100 |
0.747 |
| comEA | Vibrio cholerae C6706 |
55.556 |
100 |
0.556 |
| comEA | Vibrio cholerae strain A1552 |
55.556 |
100 |
0.556 |
| comE1/comEA | Haemophilus influenzae Rd KW20 |
41.071 |
100 |
0.465 |
| comEA/comE1 | Glaesserella parasuis strain SC1401 |
39.252 |
100 |
0.424 |
| comEA | Legionella pneumophila str. Paris |
37.374 |
100 |
0.374 |
| comEA | Legionella pneumophila strain ERS1305867 |
37.374 |
100 |
0.374 |