Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   ACNVED_RS03680 Genome accession   NZ_CP183303
Coordinates   827940..828998 (+) Length   352 a.a.
NCBI ID   WP_419420411.1    Uniprot ID   -
Organism   Legionella sp. D16C41     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 822940..833998
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNVED_RS03670 (ACNVED_03670) - 824074..826452 (-) 2379 WP_419420409.1 penicillin-binding protein 1A -
  ACNVED_RS03675 (ACNVED_03675) - 826692..827687 (-) 996 WP_419420410.1 hypothetical protein -
  ACNVED_RS03680 (ACNVED_03680) pilM 827940..828998 (+) 1059 WP_419420411.1 type IV pilus assembly protein PilM Machinery gene
  ACNVED_RS03685 (ACNVED_03685) pilN 829004..829558 (+) 555 WP_419420412.1 PilN domain-containing protein Machinery gene
  ACNVED_RS03690 (ACNVED_03690) pilO 829558..830157 (+) 600 WP_419421141.1 type 4a pilus biogenesis protein PilO Machinery gene
  ACNVED_RS03695 (ACNVED_03695) - 830154..830666 (+) 513 WP_419420413.1 pilus assembly protein PilP -
  ACNVED_RS03700 (ACNVED_03700) pilQ 830677..832815 (+) 2139 WP_419420414.1 type IV pilus secretin PilQ Machinery gene
  ACNVED_RS03705 (ACNVED_03705) aroK 833136..833663 (+) 528 WP_419420415.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 39600.62 Da        Isoelectric Point: 4.6146

>NTDB_id=1105169 ACNVED_RS03680 WP_419420411.1 827940..828998(+) (pilM) [Legionella sp. D16C41]
MFKFKSKCPPILGVDISSTAIKIVEISGREDSRTVEGYGYQLLPPNTMEGHTIKDIDAVSLTIQNILNRYHLKSKLAVLS
VPDSLVISKVIQVNEGLNDFEIEELVIMEADKFIPFPIEEINIDFEIIGQSARNTAMLDILVVASRSENVNTRVEAATKA
GLQVKIMDVESFAIERVCNLLNKLEQPINKITAVIDIGAFFANLYVLKNNEIIFTREEEFGGSQLTETIEHYYHISYEEA
LRLETQQQQVPADYQTEIITPFIETLILHVKRALQFFYSTSNYTTIDQIILTGGIARIPELAKRIEEEINIVTIAANPFS
YLNLNRKLNAEYVANDAALLMIACGLALRHMG

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=1105169 ACNVED_RS03680 WP_419420411.1 827940..828998(+) (pilM) [Legionella sp. D16C41]
ATGTTTAAATTTAAGTCTAAATGCCCCCCTATTTTAGGGGTAGATATTAGTTCAACAGCTATTAAAATTGTTGAAATATC
AGGGCGTGAAGACTCTCGTACTGTTGAGGGCTATGGCTATCAGTTATTGCCGCCTAATACTATGGAAGGGCACACTATTA
AAGATATTGATGCAGTGAGTCTAACCATCCAAAATATCCTTAATCGCTACCACTTAAAAAGTAAATTAGCTGTTTTATCT
GTACCTGATTCTCTAGTAATAAGTAAAGTTATTCAAGTAAATGAAGGGTTGAATGATTTTGAAATTGAAGAATTAGTTAT
TATGGAAGCAGATAAATTTATTCCTTTCCCAATTGAAGAAATTAATATTGATTTTGAAATAATAGGTCAATCAGCTAGAA
ATACAGCCATGCTTGATATCCTTGTTGTTGCTTCACGCTCAGAAAATGTGAACACTCGGGTTGAAGCAGCAACAAAAGCA
GGGTTACAAGTCAAAATTATGGATGTTGAGTCTTTTGCTATAGAAAGGGTATGTAATTTGCTCAATAAATTAGAACAGCC
AATTAATAAAATTACAGCTGTAATTGATATAGGGGCTTTTTTTGCCAATCTTTATGTCCTAAAAAACAATGAAATTATTT
TTACGCGTGAAGAAGAGTTCGGAGGTAGCCAACTGACTGAGACTATTGAACACTATTATCATATTTCTTATGAAGAAGCG
TTACGCTTAGAAACACAGCAACAACAAGTACCAGCAGATTATCAAACAGAAATTATTACACCCTTTATTGAGACATTAAT
ATTACATGTAAAACGTGCTTTACAATTTTTCTATTCAACCAGTAACTATACAACTATTGATCAAATTATATTAACTGGTG
GTATTGCTAGAATACCAGAGCTTGCAAAGAGAATTGAAGAAGAAATTAATATCGTTACAATAGCAGCAAACCCTTTTTCT
TATTTAAATCTTAATAGGAAGTTAAATGCTGAATATGTAGCTAATGATGCAGCTTTGTTAATGATAGCTTGTGGCTTAGC
ATTACGGCATATGGGTTAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-350)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Legionella pneumophila strain ERS1305867

50.142

99.716

0.5
  pilM Acinetobacter baumannii D1279779

38.235

96.591

0.369
  comM Acinetobacter nosocomialis M2

38.235

96.591

0.369
  comM Acinetobacter baylyi ADP1

37.353

96.591

0.361

Multiple sequence alignment