Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   ACNVED_RS03700 Genome accession   NZ_CP183303
Coordinates   830677..832815 (+) Length   712 a.a.
NCBI ID   WP_419420414.1    Uniprot ID   -
Organism   Legionella sp. D16C41     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 825677..837815
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNVED_RS03675 (ACNVED_03675) - 826692..827687 (-) 996 WP_419420410.1 hypothetical protein -
  ACNVED_RS03680 (ACNVED_03680) pilM 827940..828998 (+) 1059 WP_419420411.1 type IV pilus assembly protein PilM Machinery gene
  ACNVED_RS03685 (ACNVED_03685) pilN 829004..829558 (+) 555 WP_419420412.1 PilN domain-containing protein Machinery gene
  ACNVED_RS03690 (ACNVED_03690) pilO 829558..830157 (+) 600 WP_419421141.1 type 4a pilus biogenesis protein PilO Machinery gene
  ACNVED_RS03695 (ACNVED_03695) - 830154..830666 (+) 513 WP_419420413.1 pilus assembly protein PilP -
  ACNVED_RS03700 (ACNVED_03700) pilQ 830677..832815 (+) 2139 WP_419420414.1 type IV pilus secretin PilQ Machinery gene
  ACNVED_RS03705 (ACNVED_03705) aroK 833136..833663 (+) 528 WP_419420415.1 shikimate kinase AroK -
  ACNVED_RS03710 (ACNVED_03710) aroB 833650..834756 (+) 1107 WP_419420416.1 3-dehydroquinate synthase -
  ACNVED_RS03715 (ACNVED_03715) - 834761..835828 (+) 1068 WP_419420417.1 AAA family ATPase -
  ACNVED_RS03720 (ACNVED_03720) pnuC 835982..836584 (-) 603 WP_419420418.1 nicotinamide riboside transporter PnuC -

Sequence

Protein


Download         Length: 712 a.a.        Molecular weight: 78521.08 Da        Isoelectric Point: 9.9831

>NTDB_id=1105172 ACNVED_RS03700 WP_419420414.1 830677..832815(+) (pilQ) [Legionella sp. D16C41]
MRRFIGVVVLFVSFYGALFAKDNVLVGIKVIPLPSERVKIDFVFSEPLTTLPTSFITEKPMRLVLDFAQAMSQLDQTVVA
KKINLGVLSDYIIVAVDKRVRAILNLSTVAIYSGYVAGNIYTLTLTGKTQPVSEQRKEVFITHRPVKAHFTINNIDFRGT
GKQVGRAIIDVSSGSIPVEIKQVGKNIIANFISTRVPERLMKLYDVADFQSPAQLITLRQIGKNTQLVIKNKGDYGHFAY
QVNKQFFIDIFPLTAEEVRQAKLKKQVYTGKAISLNFQDISIRAVLQLLAEFSGFNIVVSNAVDGKITLRLHDVPWDQAL
DIILKTNNLDKRQTGNIIFVERADTLVKREQAELKSQQVVTNLAPLRSELLQLNFAKAADIATLLKDRNTSLLSRRGSVS
VDARTNTIWIQDTGDQIEHIRDLVKQLDIPVRQVQIEARIVNVSREAIKDLGVRFGISRPPHLSGTLEGANAFQVPPAFD
PVTGTLIPAAVPIAQRLNVDLPAPVANPASIGIALAKLGDDILLDLELSALESEDKADIIASPRLMTTNQQAALIESGEE
IPYQEATSSGATAVAFKKAVLSLKVTPQITPDNKILLDLQINQDTPSPRLVNGVPAILTKQIQTSVLVNNGQTVVLGGIY
QQEKDSTINRVPFLGELPGIGVLFRNKHSRIRNEELLIFITPRIITDNLSILAVNGRGIELDKFGKPINVYK

Nucleotide


Download         Length: 2139 bp        

>NTDB_id=1105172 ACNVED_RS03700 WP_419420414.1 830677..832815(+) (pilQ) [Legionella sp. D16C41]
TTGCGTAGGTTTATCGGCGTAGTTGTACTGTTTGTTAGTTTTTATGGTGCTTTATTTGCTAAAGATAATGTTTTAGTAGG
GATAAAAGTTATCCCTTTGCCAAGTGAAAGAGTAAAAATAGATTTTGTTTTCAGTGAGCCATTAACTACTTTACCTACAA
GCTTTATCACCGAAAAGCCCATGCGCTTAGTACTGGATTTTGCACAGGCTATGAGCCAACTTGATCAGACAGTAGTGGCT
AAAAAAATTAACCTGGGAGTTTTAAGTGACTATATTATCGTAGCAGTTGATAAACGAGTACGCGCCATTCTTAATTTATC
TACAGTAGCTATTTATTCAGGTTATGTTGCTGGCAATATTTATACGCTAACCCTTACAGGTAAAACGCAGCCTGTTTCTG
AGCAACGTAAAGAGGTATTTATTACTCATAGGCCAGTTAAAGCTCATTTTACGATTAATAATATTGATTTTCGGGGAACG
GGTAAGCAAGTTGGGCGAGCCATAATTGATGTTTCAAGTGGTAGCATACCGGTGGAAATCAAACAAGTAGGTAAGAATAT
TATAGCCAACTTTATCAGTACTCGTGTTCCTGAACGGTTAATGAAACTTTACGATGTGGCTGATTTTCAAAGCCCAGCTC
AACTGATAACCTTACGACAAATTGGCAAAAACACGCAGTTAGTTATCAAAAATAAAGGCGACTATGGTCATTTTGCCTAT
CAGGTTAATAAGCAATTTTTTATCGATATTTTCCCCTTAACAGCGGAAGAAGTAAGACAGGCGAAATTAAAAAAACAGGT
TTATACGGGCAAAGCTATTTCCTTAAATTTTCAAGATATTTCAATTCGGGCAGTATTGCAGTTATTAGCGGAGTTTAGTG
GTTTTAATATTGTAGTAAGTAATGCAGTTGACGGCAAAATTACCTTACGATTACATGATGTGCCTTGGGATCAAGCACTT
GATATTATTCTTAAGACTAATAACCTTGATAAAAGGCAGACTGGTAATATTATCTTTGTTGAAAGAGCAGATACTTTAGT
CAAAAGAGAGCAAGCAGAGCTTAAATCGCAGCAAGTTGTAACTAATTTAGCACCACTACGTTCTGAGTTATTGCAATTAA
ATTTTGCTAAAGCAGCAGATATTGCTACTCTTTTAAAAGATAGAAATACATCATTATTATCAAGACGAGGCTCGGTAAGT
GTTGATGCGCGTACTAATACTATCTGGATTCAAGACACAGGTGATCAAATTGAACATATTCGTGATTTAGTCAAACAGCT
TGATATTCCAGTTAGACAAGTACAAATTGAGGCACGTATCGTAAATGTATCACGTGAAGCTATTAAAGATTTAGGTGTGC
GTTTTGGAATTTCTCGGCCGCCACATTTGAGTGGGACGCTAGAGGGTGCTAATGCATTCCAAGTGCCCCCAGCCTTTGAT
CCTGTTACCGGAACTCTCATACCAGCGGCAGTTCCCATTGCGCAGCGATTGAATGTAGATTTACCTGCTCCAGTTGCAAA
TCCTGCTTCTATAGGTATTGCATTAGCTAAGCTTGGTGATGATATTTTGCTAGATTTAGAACTTTCTGCGTTAGAAAGTG
AGGATAAAGCAGACATTATTGCTAGCCCACGATTAATGACGACCAATCAACAAGCAGCTTTAATTGAGTCAGGTGAAGAA
ATACCTTATCAGGAAGCTACATCAAGCGGGGCTACAGCAGTTGCCTTTAAAAAGGCAGTTTTAAGTTTAAAAGTAACCCC
TCAGATTACACCTGATAATAAGATACTTTTAGATTTACAGATTAACCAAGATACACCTTCCCCACGTTTAGTAAATGGGG
TGCCAGCTATTTTGACTAAACAAATTCAGACTAGCGTTTTAGTAAATAATGGCCAAACAGTCGTATTAGGTGGTATTTAT
CAACAAGAAAAAGATAGTACTATTAATCGGGTGCCTTTTTTAGGTGAATTACCTGGTATTGGCGTTTTATTTCGTAATAA
ACATTCAAGAATTAGAAATGAAGAGTTGCTCATTTTCATTACTCCAAGGATAATAACGGATAATTTATCCATTTTGGCAG
TAAATGGACGAGGCATTGAATTAGATAAATTTGGAAAGCCAATTAATGTTTATAAATAA

Domains

Predicted by InterproScan.

Secretin and TonB N terminus short domain (STN)

(295-342)

Bacterial type II and III secretion system protein (Secretin)

(530-685)

Bacterial type II/III secretion system short domain (Secretin_N)

(369-433)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Legionella pneumophila strain Lp02

63.636

95.787

0.61
  pilQ Legionella pneumophila strain ERS1305867

63.49

95.787

0.608
  pilQ Pseudomonas aeruginosa PAK

37.606

99.719

0.375
  comQ Acinetobacter baylyi ADP1

38.095

97.331

0.371

Multiple sequence alignment