Detailed information    

insolico Bioinformatically predicted

Overview


Name   clpP   Type   Regulator
Locus tag   ACLQ7P_RS19425 Genome accession   NZ_CP181322
Coordinates   3635680..3636273 (+) Length   197 a.a.
NCBI ID   WP_003228214.1    Uniprot ID   A0A199WEF2
Organism   Bacillus subtilis subsp. subtilis strain JCK-1398     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context


Location: 3630680..3641273
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLQ7P_RS19395 (ACLQ7P_19395) aspP 3631656..3633218 (+) 1563 WP_327845444.1 aspartate/proton symporter AspP -
  ACLQ7P_RS19400 (ACLQ7P_19400) - 3633312..3633896 (+) 585 WP_003228226.1 TetR family transcriptional regulator -
  ACLQ7P_RS19405 (ACLQ7P_19405) psmA 3633978..3634313 (+) 336 WP_041333258.1 SMR family transporter -
  ACLQ7P_RS19410 (ACLQ7P_19410) psmB 3634313..3634633 (+) 321 WP_416247178.1 DMT family transporter -
  ACLQ7P_RS19415 (ACLQ7P_19415) yvdQ 3634669..3635141 (-) 473 Protein_3766 DUF3231 family protein -
  ACLQ7P_RS19425 (ACLQ7P_19425) clpP 3635680..3636273 (+) 594 WP_003228214.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  ACLQ7P_RS19430 (ACLQ7P_19430) pgmB 3636336..3637010 (-) 675 WP_014480982.1 beta-phosphoglucomutase -
  ACLQ7P_RS19435 (ACLQ7P_19435) malL 3637007..3638692 (-) 1686 WP_326121031.1 oligo-1,6-glucosidase -
  ACLQ7P_RS19440 (ACLQ7P_19440) mdxK 3638685..3640958 (-) 2274 WP_416247665.1 maltose phosphorylase -

Sequence


Protein


Download         Length: 197 a.a.        Molecular weight: 21682.00 Da        Isoelectric Point: 4.9416

>NTDB_id=1099730 ACLQ7P_RS19425 WP_003228214.1 3635680..3636273(+) (clpP) [Bacillus subtilis subsp. subtilis strain JCK-1398]
MNLIPTVIEQTNRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLAAEDPEKEISLYINSPGGSITAGMAIYDT
MQFIKPKVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIEIAAKRILLLRDKLNKVLAERTGQ
PLEVIERDTDRDNFKSAEEALEYGLIDKILTHTEDKK

Nucleotide


Download         Length: 594 bp        

>NTDB_id=1099730 ACLQ7P_RS19425 WP_003228214.1 3635680..3636273(+) (clpP) [Bacillus subtilis subsp. subtilis strain JCK-1398]
ATGAATTTAATACCTACAGTCATTGAACAAACGAACCGCGGGGAAAGAGCGTATGACATTTATTCTCGTCTATTAAAGGA
TCGTATCATCATGCTTGGATCTGCGATTGATGACAACGTTGCGAACTCCATCGTGTCACAGCTTTTATTCTTAGCAGCAG
AAGACCCTGAAAAAGAAATTTCTCTTTACATCAACAGCCCGGGCGGCTCTATTACAGCCGGTATGGCGATCTATGATACC
ATGCAGTTTATTAAGCCGAAGGTATCTACAATTTGTATCGGTATGGCTGCGTCAATGGGCGCTTTCCTGCTTGCAGCCGG
CGAAAAAGGCAAACGCTATGCGCTTCCAAACAGTGAAGTCATGATTCACCAGCCACTTGGCGGTGCGCAAGGTCAGGCGA
CAGAAATTGAAATTGCCGCGAAACGCATTCTCTTGCTTCGCGACAAACTAAACAAAGTCCTTGCTGAACGTACTGGCCAG
CCGCTTGAAGTGATCGAACGCGACACAGACCGTGATAACTTCAAGTCTGCTGAAGAAGCGCTTGAATACGGCCTGATTGA
CAAAATTTTGACTCACACAGAAGACAAAAAGTAA

Domains


Predicted by InterproScan.

(13-192)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A199WEF2

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

100

100

1

  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

68.617

95.431

0.655

  clpP Streptococcus thermophilus LMG 18311

58.163

99.492

0.579

  clpP Streptococcus thermophilus LMD-9

58.163

99.492

0.579

  clpP Streptococcus pneumoniae D39

57.812

97.462

0.563

  clpP Streptococcus pneumoniae Rx1

57.812

97.462

0.563

  clpP Streptococcus pneumoniae R6

57.812

97.462

0.563

  clpP Streptococcus pneumoniae TIGR4

57.812

97.462

0.563

  clpP Lactococcus lactis subsp. cremoris KW2

57.895

96.447

0.558

  clpP Streptococcus pyogenes JRS4

56.122

99.492

0.558

  clpP Streptococcus pyogenes MGAS315

56.122

99.492

0.558

  clpP Streptococcus mutans UA159

54.822

100

0.548

  clpP Lactococcus lactis subsp. lactis strain DGCC12653

55.789

96.447

0.538


Multiple sequence alignment