Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   ACM67B_RS10890 Genome accession   NZ_CP181247
Coordinates   2266503..2266790 (+) Length   95 a.a.
NCBI ID   WP_416190565.1    Uniprot ID   -
Organism   Neisseria sp. CCUG17229     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2261503..2271790
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACM67B_RS10870 (ACM67B_10870) - 2262181..2262318 (+) 138 WP_416189616.1 hypothetical protein -
  ACM67B_RS10875 (ACM67B_10875) - 2262438..2263877 (-) 1440 WP_416189617.1 OmpP1/FadL family transporter -
  ACM67B_RS10880 (ACM67B_10880) pyk 2264079..2265551 (-) 1473 WP_416189618.1 pyruvate kinase -
  ACM67B_RS10885 (ACM67B_10885) - 2265849..2266343 (+) 495 WP_416189619.1 hypothetical protein -
  ACM67B_RS10890 (ACM67B_10890) comE 2266503..2266790 (+) 288 WP_416190565.1 ComEA family DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 9864.51 Da        Isoelectric Point: 10.6245

>NTDB_id=1099587 ACM67B_RS10890 WP_416190565.1 2266503..2266790(+) (comE) [Neisseria sp. CCUG17229]
MKKILFTALATLAASISAAAVNINTASESELTALPGIGPAKAKAIAEYRKQHGSFKTVDELKNVKGIGEGIFSKLKNEAT
VTAPAKKAARPAVEK

Nucleotide


Download         Length: 288 bp        

>NTDB_id=1099587 ACM67B_RS10890 WP_416190565.1 2266503..2266790(+) (comE) [Neisseria sp. CCUG17229]
TTGAAAAAAATCCTCTTTACCGCACTGGCTACTCTGGCCGCCTCGATATCGGCTGCAGCCGTCAATATCAATACGGCCTC
CGAAAGCGAACTGACCGCCCTGCCGGGCATCGGCCCAGCCAAAGCCAAAGCGATTGCGGAGTACCGCAAACAGCACGGCA
GCTTTAAAACGGTGGATGAGTTGAAAAACGTCAAAGGCATTGGCGAGGGAATCTTCTCGAAGCTGAAGAATGAGGCTACT
GTCACTGCGCCGGCCAAGAAGGCTGCCCGGCCTGCTGTGGAAAAATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(19-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

56.566

100

0.589
  comE Neisseria gonorrhoeae MS11

56.566

100

0.589
  comE Neisseria gonorrhoeae MS11

56.566

100

0.589
  comE Neisseria gonorrhoeae MS11

56.566

100

0.589
  Cj0011c Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

54.321

85.263

0.463
  comEA/celA/cilE Streptococcus pneumoniae R6

47.368

80

0.379
  comEA/celA/cilE Streptococcus pneumoniae Rx1

47.368

80

0.379
  comEA/celA/cilE Streptococcus pneumoniae D39

47.368

80

0.379
  comEA Staphylococcus aureus MW2

57.377

64.211

0.368
  comEA Staphylococcus aureus N315

57.377

64.211

0.368

Multiple sequence alignment