Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   ACM1PH_RS10730 Genome accession   NZ_CP181055
Coordinates   2046146..2046640 (-) Length   164 a.a.
NCBI ID   WP_135500513.1    Uniprot ID   -
Organism   Planococcus koreensis strain OC-PG-Soil     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2041146..2051640
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACM1PH_RS10710 (ACM1PH_10710) rplI 2041536..2041985 (-) 450 WP_135500516.1 50S ribosomal protein L9 -
  ACM1PH_RS10715 (ACM1PH_10715) - 2041982..2043957 (-) 1976 Protein_2139 DHH family phosphoesterase -
  ACM1PH_RS10720 (ACM1PH_10720) - 2043971..2044921 (-) 951 WP_416143791.1 YybS family protein -
  ACM1PH_RS10725 (ACM1PH_10725) rpsR 2045859..2046095 (-) 237 WP_006830564.1 30S ribosomal protein S18 -
  ACM1PH_RS10730 (ACM1PH_10730) ssbA 2046146..2046640 (-) 495 WP_135500513.1 single-stranded DNA-binding protein Machinery gene
  ACM1PH_RS10735 (ACM1PH_10735) rpsF 2046692..2046979 (-) 288 WP_290213412.1 30S ribosomal protein S6 -
  ACM1PH_RS10740 (ACM1PH_10740) - 2047155..2047715 (+) 561 WP_416143792.1 DUF3267 domain-containing protein -
  ACM1PH_RS10745 (ACM1PH_10745) - 2047737..2048123 (-) 387 WP_416143793.1 gamma-glutamylcyclotransferase family protein -
  ACM1PH_RS10750 (ACM1PH_10750) ychF 2048295..2049395 (-) 1101 WP_290213427.1 redox-regulated ATPase YchF -
  ACM1PH_RS10755 (ACM1PH_10755) - 2049519..2049719 (-) 201 WP_135500509.1 DUF951 domain-containing protein -
  ACM1PH_RS10760 (ACM1PH_10760) - 2049735..2050643 (-) 909 WP_416143794.1 mechanosensitive ion channel family protein -
  ACM1PH_RS10765 (ACM1PH_10765) - 2050667..2051380 (-) 714 WP_416143795.1 DUF554 domain-containing protein -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 17910.58 Da        Isoelectric Point: 4.9327

>NTDB_id=1097960 ACM1PH_RS10730 WP_135500513.1 2046146..2046640(-) (ssbA) [Planococcus koreensis strain OC-PG-Soil]
MINRVVLVGRLTKDPDLRYTPSGAAVARFTLAVNRTFSNAQGEKETDFINCTVWRKQAENTANFLKKGSLAGVEGRIQTG
SYEGQDGKRVYTTEVVADSVQFLEPKSSGAGADRSQGQQPSYQQNQSPSPSQQNPSQQNYTRVDQDPFSSGSGPIEVSDD
DLPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=1097960 ACM1PH_RS10730 WP_135500513.1 2046146..2046640(-) (ssbA) [Planococcus koreensis strain OC-PG-Soil]
ATGATTAACCGAGTTGTTTTAGTCGGAAGACTGACAAAAGATCCAGACCTTCGCTACACTCCAAGCGGTGCGGCAGTTGC
CCGTTTTACACTTGCTGTAAACCGGACATTCTCCAATGCGCAGGGTGAGAAGGAAACTGATTTTATCAATTGTACTGTTT
GGCGCAAACAAGCTGAAAACACAGCGAATTTCCTGAAAAAAGGAAGCTTGGCTGGCGTAGAAGGCCGCATTCAAACTGGA
AGCTACGAGGGGCAGGACGGAAAGCGCGTTTATACGACGGAAGTCGTTGCAGACAGCGTCCAATTCCTGGAACCGAAAAG
TTCTGGAGCTGGTGCAGACCGTTCACAAGGACAACAGCCGTCCTATCAACAGAACCAATCGCCAAGCCCAAGTCAGCAAA
ACCCAAGCCAACAAAACTATACACGCGTAGACCAGGATCCGTTCTCAAGCGGCAGCGGCCCGATCGAAGTATCGGACGAC
GATCTGCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

59.302

100

0.622
  ssb Latilactobacillus sakei subsp. sakei 23K

54.651

100

0.573
  ssbB Bacillus subtilis subsp. subtilis str. 168

65.487

68.902

0.451
  ssb Neisseria gonorrhoeae MS11

36.416

100

0.384
  ssb Vibrio cholerae strain A1552

35.429

100

0.378
  ssb Neisseria meningitidis MC58

34.27

100

0.372

Multiple sequence alignment