Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   ACM26V_RS24600 Genome accession   NZ_CP181045
Coordinates   5168632..5169375 (+) Length   247 a.a.
NCBI ID   WP_416149386.1    Uniprot ID   -
Organism   Salipaludibacillus sp. HK11     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5163632..5174375
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACM26V_RS24570 (ACM26V_24570) - 5164011..5164193 (-) 183 WP_416149380.1 DUF2759 family protein -
  ACM26V_RS24575 (ACM26V_24575) - 5164434..5165075 (+) 642 WP_416149381.1 MBL fold metallo-hydrolase -
  ACM26V_RS24580 (ACM26V_24580) - 5165284..5166429 (+) 1146 WP_416149382.1 class I SAM-dependent methyltransferase -
  ACM26V_RS24585 (ACM26V_24585) - 5166460..5166705 (-) 246 WP_416149383.1 DUF2626 domain-containing protein -
  ACM26V_RS24590 (ACM26V_24590) - 5166986..5167690 (-) 705 WP_416149384.1 helix-turn-helix transcriptional regulator -
  ACM26V_RS24595 (ACM26V_24595) - 5167988..5168431 (+) 444 WP_416149385.1 YtxH domain-containing protein -
  ACM26V_RS24600 (ACM26V_24600) comGA 5168632..5169375 (+) 744 WP_416149386.1 ATPase, T2SS/T4P/T4SS family Machinery gene
  ACM26V_RS24605 (ACM26V_24605) - 5169362..5170795 (-) 1434 WP_416149387.1 recombinase family protein -
  ACM26V_RS24610 (ACM26V_24610) - 5170868..5171515 (-) 648 WP_416149388.1 LexA family protein -
  ACM26V_RS24615 (ACM26V_24615) - 5171673..5171897 (+) 225 WP_416149389.1 helix-turn-helix domain-containing protein -
  ACM26V_RS24620 (ACM26V_24620) - 5172037..5172351 (+) 315 WP_416149390.1 hypothetical protein -
  ACM26V_RS24625 (ACM26V_24625) sinI 5172369..5172431 (+) 63 WP_416151960.1 DNA-binding anti-repressor SinI -
  ACM26V_RS24630 (ACM26V_24630) - 5172474..5172896 (+) 423 WP_416149391.1 hypothetical protein -
  ACM26V_RS24635 (ACM26V_24635) - 5173069..5173272 (+) 204 WP_416149392.1 hypothetical protein -
  ACM26V_RS24640 (ACM26V_24640) - 5173525..5173722 (+) 198 WP_416149393.1 hypothetical protein -
  ACM26V_RS24645 (ACM26V_24645) - 5173719..5173904 (+) 186 WP_416149394.1 hypothetical protein -
  ACM26V_RS24650 (ACM26V_24650) - 5173924..5174229 (+) 306 WP_416149395.1 hypothetical protein -

Sequence

Protein


Download         Length: 247 a.a.        Molecular weight: 27817.38 Da        Isoelectric Point: 8.8460

>NTDB_id=1097939 ACM26V_RS24600 WP_416149386.1 5168632..5169375(+) (comGA) [Salipaludibacillus sp. HK11]
MDMDIEQKTKLILSEALKFGASDVHLIPRERGSTIRYRVDGQLLDVEKLPLATMNKLIAHLKFISGMDIGERRRPQNSGL
EMTLEHQVVFTRISTFPSSSFETLVLRLFPQKHSKSLEQLSLFPSQIKHLHQLIQKPNGLIIVCGPTGAGKTTTLYSLLQ
KRTEEINENIITLEDPVEQIQPGFLQMEINEKAGVTYATGLKSLLRHDPDLIMIGEVRDTETAKMAVRAALTGHSVMLIG
TYIFNRK

Nucleotide


Download         Length: 744 bp        

>NTDB_id=1097939 ACM26V_RS24600 WP_416149386.1 5168632..5169375(+) (comGA) [Salipaludibacillus sp. HK11]
ATGGATATGGATATTGAACAGAAAACAAAATTGATTTTATCTGAAGCGCTAAAGTTTGGTGCCTCTGATGTGCATTTAAT
CCCCCGAGAGCGAGGGTCAACCATTCGATATAGAGTGGATGGTCAATTATTAGATGTAGAGAAGTTGCCCTTGGCTACGA
TGAACAAGCTGATTGCCCATTTGAAGTTTATTTCGGGAATGGATATCGGTGAACGGAGACGGCCGCAAAATAGTGGTTTG
GAAATGACTCTTGAACATCAAGTTGTTTTCACGAGAATTTCAACCTTCCCGTCATCTTCTTTCGAAACCCTCGTATTAAG
ACTATTTCCACAAAAACATTCTAAAAGTTTAGAACAACTTTCTTTATTTCCTTCTCAAATTAAACACCTCCATCAATTGA
TTCAAAAACCAAACGGACTTATTATCGTCTGTGGCCCTACTGGTGCAGGAAAGACAACGACACTTTATTCGTTACTACAA
AAACGAACAGAAGAAATCAACGAAAATATCATTACGTTAGAGGATCCAGTAGAGCAAATTCAGCCTGGTTTTTTACAAAT
GGAAATTAATGAAAAAGCAGGTGTCACATACGCTACAGGTTTGAAAAGTCTACTCCGCCACGACCCCGACCTCATCATGA
TTGGAGAAGTTCGTGATACAGAAACCGCAAAAATGGCTGTACGAGCAGCTTTAACAGGGCATTCGGTTATGTTAATAGGC
ACATACATATTTAATAGAAAGTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(11-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

50.424

95.547

0.482
  pilB Legionella pneumophila strain ERS1305867

45.175

92.308

0.417
  pilF Neisseria gonorrhoeae MS11

44.105

92.713

0.409
  pilB Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

40.426

95.142

0.385
  pilB Acinetobacter baumannii D1279779

41.667

92.308

0.385
  pilF Thermus thermophilus HB27

39.331

96.761

0.381
  pilB Vibrio parahaemolyticus RIMD 2210633

40

93.117

0.372
  pilB Vibrio campbellii strain DS40M4

39.394

93.522

0.368
  pilB/pilB1 Synechocystis sp. PCC 6803

39.738

92.713

0.368
  pilB Acinetobacter baylyi ADP1

39.912

92.308

0.368
  pilB Glaesserella parasuis strain SC1401

40.444

91.093

0.368
  pilB Vibrio cholerae strain A1552

39.301

92.713

0.364

Multiple sequence alignment