Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   ACM0O0_RS01510 Genome accession   NZ_CP180689
Coordinates   312591..313649 (+) Length   352 a.a.
NCBI ID   WP_016143662.1    Uniprot ID   R8YYR3
Organism   Acinetobacter lactucae isolate nanjing     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 307591..318649
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACM0O0_RS01495 - 308693..309025 (+) 333 WP_016143665.1 hypothetical protein -
  ACM0O0_RS01500 - 309028..309852 (+) 825 WP_416040964.1 putative RNA methyltransferase -
  ACM0O0_RS01505 ponA 309868..312429 (-) 2562 WP_416040965.1 penicillin-binding protein PBP1a -
  ACM0O0_RS01510 pilM 312591..313649 (+) 1059 WP_016143662.1 pilus assembly protein PilM Machinery gene
  ACM0O0_RS01515 pilN 313649..314290 (+) 642 WP_416040966.1 PilN domain-containing protein Machinery gene
  ACM0O0_RS01520 pilO 314287..315066 (+) 780 WP_416040967.1 type 4a pilus biogenesis protein PilO Machinery gene
  ACM0O0_RS01525 pilP 315078..315605 (+) 528 WP_125738852.1 pilus assembly protein PilP Machinery gene
  ACM0O0_RS01530 pilQ 315668..317794 (+) 2127 WP_416040968.1 type IV pilus secretin PilQ Machinery gene
  ACM0O0_RS01535 aroK 317806..318375 (+) 570 WP_002116987.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 39032.61 Da        Isoelectric Point: 4.4217

>NTDB_id=1097442 ACM0O0_RS01510 WP_016143662.1 312591..313649(+) (pilM) [Acinetobacter lactucae isolate nanjing]
MLRLYRKPNKGLMGVDISSTSVKLLELSVKNGKYWVESYALTPLPENSVVEKNILNPEAVAEALERAMNLANPQTSNAAI
AVPTSTVIHKTIEMDADMNDDEREVQIRLDAEQYIPFPLDEVSLDFEVLPDRLPNPNRVNVLLVATRTENVETRVEVLEL
VDLTPKLADVESYAVERAFSVFADSLPMGASTIGILDIGHTMTTLSVMQNGKIIYTREQVFGGKQLTLEIQSRYGLSLEE
AGRAKKERSLPDDYDIEILEPFLDAVVQQAARSLQFFFSSSQFNEIDHILLAGGNANIPGLAKLLQQKLGYRVTIANPFL
QMGFSPQVDIQKIENDASSLMVACGLALRSFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=1097442 ACM0O0_RS01510 WP_016143662.1 312591..313649(+) (pilM) [Acinetobacter lactucae isolate nanjing]
GTGCTCAGGTTATATCGTAAACCGAATAAGGGGTTAATGGGTGTCGATATTAGTTCGACTTCTGTTAAGTTGTTAGAGCT
CTCTGTTAAGAACGGTAAATATTGGGTGGAAAGCTATGCTTTAACACCTTTACCTGAGAACAGTGTAGTTGAAAAAAATA
TCTTGAATCCTGAAGCAGTTGCAGAAGCTTTGGAAAGGGCGATGAATTTAGCAAATCCCCAAACCAGTAACGCTGCAATT
GCTGTTCCAACATCGACGGTTATTCATAAAACTATCGAAATGGATGCAGATATGAACGATGATGAGCGTGAAGTTCAGAT
TCGATTAGATGCGGAGCAATATATACCGTTCCCTTTGGATGAGGTGAGCCTTGATTTTGAGGTTTTACCAGATCGACTGC
CAAATCCAAATCGTGTGAATGTACTTTTAGTCGCAACGCGCACAGAAAATGTTGAAACACGCGTAGAAGTACTGGAACTG
GTAGATTTAACGCCTAAACTTGCTGATGTCGAGAGTTATGCTGTCGAGCGTGCTTTTAGTGTGTTTGCTGATAGCTTACC
CATGGGTGCAAGTACCATTGGTATTTTAGATATTGGCCATACCATGACCACATTATCGGTTATGCAAAATGGCAAAATCA
TTTACACCCGTGAACAAGTCTTTGGCGGTAAACAGCTTACTCTCGAAATTCAAAGCCGTTATGGTTTGTCATTAGAAGAG
GCGGGACGGGCTAAAAAAGAACGTTCTTTGCCAGATGATTATGACATCGAAATCTTAGAACCATTTTTAGATGCTGTAGT
TCAGCAAGCTGCTAGATCTCTACAATTTTTCTTCTCTTCATCCCAATTCAATGAAATTGACCATATTTTGCTTGCAGGTG
GTAATGCCAACATTCCAGGCCTTGCGAAATTGTTGCAGCAAAAACTTGGTTACCGAGTCACTATTGCTAATCCGTTTTTA
CAAATGGGCTTTTCTCCTCAAGTCGATATTCAAAAAATTGAAAATGATGCCTCATCATTAATGGTGGCGTGTGGCTTGGC
CTTAAGGAGTTTTGATTAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(14-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB R8YYR3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Acinetobacter baumannii D1279779

95.739

100

0.957
  comM Acinetobacter nosocomialis M2

95.739

100

0.957
  comM Acinetobacter baylyi ADP1

81.534

100

0.815
  pilM Legionella pneumophila strain ERS1305867

41.808

100

0.42

Multiple sequence alignment