Detailed information    

insolico Bioinformatically predicted

Overview


Name   prx   Type   Regulator
Locus tag   ACM3H0_RS06935 Genome accession   NZ_CP180685
Coordinates   1305277..1305459 (-) Length   60 a.a.
NCBI ID   WP_000965649.1    Uniprot ID   A0AAV3JNR0
Organism   Streptococcus agalactiae strain M14     
Function   Inhibit ComR activation (predicted from homology)   
Competence regulation

Related MGE


Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1305277..1355080 1305277..1305459 within 0


Gene organization within MGE regions


Location: 1305277..1355080
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACM3H0_RS06935 (ACM3H0_06935) prx 1305277..1305459 (-) 183 WP_000965649.1 hypothetical protein Regulator
  ACM3H0_RS06940 (ACM3H0_06940) - 1305877..1306047 (+) 171 WP_000356856.1 hypothetical protein -
  ACM3H0_RS06945 (ACM3H0_06945) - 1306088..1306288 (-) 201 WP_000076715.1 CsbD family protein -
  ACM3H0_RS06950 (ACM3H0_06950) - 1306397..1306696 (-) 300 WP_000258211.1 STAS-like domain-containing protein -
  ACM3H0_RS06955 (ACM3H0_06955) - 1306690..1307586 (-) 897 WP_001061853.1 sensor histidine kinase -
  ACM3H0_RS06960 (ACM3H0_06960) - 1307716..1309050 (-) 1335 WP_336317628.1 GH25 family lysozyme -
  ACM3H0_RS06965 (ACM3H0_06965) - 1309176..1309430 (-) 255 WP_000611524.1 phage holin -
  ACM3H0_RS06970 (ACM3H0_06970) - 1309432..1309734 (-) 303 WP_000215499.1 hypothetical protein -
  ACM3H0_RS06975 (ACM3H0_06975) - 1309747..1309959 (-) 213 WP_000698337.1 hypothetical protein -
  ACM3H0_RS06980 (ACM3H0_06980) - 1309934..1310260 (-) 327 WP_000404431.1 DUF1366 domain-containing protein -
  ACM3H0_RS06985 (ACM3H0_06985) - 1310274..1312286 (-) 2013 WP_050977837.1 DUF859 family phage minor structural protein -
  ACM3H0_RS06990 (ACM3H0_06990) - 1312297..1316124 (-) 3828 WP_050977836.1 glucosaminidase domain-containing protein -
  ACM3H0_RS06995 (ACM3H0_06995) - 1316115..1317637 (-) 1523 Protein_1299 distal tail protein Dit -
  ACM3H0_RS07000 (ACM3H0_07000) - 1317634..1321573 (-) 3940 Protein_1300 phage tail tape measure protein -
  ACM3H0_RS07005 (ACM3H0_07005) - 1321586..1321753 (-) 168 WP_000264971.1 hypothetical protein -
  ACM3H0_RS07010 (ACM3H0_07010) gpG 1321767..1322102 (-) 336 WP_410531500.1 phage tail assembly chaperone G -
  ACM3H0_RS07015 (ACM3H0_07015) - 1322156..1322776 (-) 621 Protein_1303 major tail protein -
  ACM3H0_RS07020 (ACM3H0_07020) - 1322792..1323217 (-) 426 WP_000559944.1 hypothetical protein -
  ACM3H0_RS07025 (ACM3H0_07025) - 1323214..1323591 (-) 378 WP_000160228.1 HK97-gp10 family putative phage morphogenesis protein -
  ACM3H0_RS07030 (ACM3H0_07030) - 1323588..1323935 (-) 348 WP_000632972.1 phage head closure protein -
  ACM3H0_RS07035 (ACM3H0_07035) - 1323932..1324234 (-) 303 WP_416055427.1 head-tail connector protein -
  ACM3H0_RS07040 (ACM3H0_07040) - 1324370..1325551 (-) 1182 WP_416055428.1 phage major capsid protein -
  ACM3H0_RS07045 (ACM3H0_07045) - 1325575..1326240 (-) 666 WP_071661629.1 head maturation protease, ClpP-related -
  ACM3H0_RS07050 (ACM3H0_07050) - 1326218..1327438 (-) 1221 WP_000007732.1 phage portal protein -
  ACM3H0_RS07055 (ACM3H0_07055) - 1327445..1327675 (-) 231 WP_001042284.1 hypothetical protein -
  ACM3H0_RS07060 (ACM3H0_07060) - 1327672..1327839 (-) 168 WP_000578945.1 hypothetical protein -
  ACM3H0_RS07065 (ACM3H0_07065) - 1327836..1329590 (-) 1755 WP_000151569.1 terminase large subunit -
  ACM3H0_RS07070 (ACM3H0_07070) - 1329605..1330072 (-) 468 WP_000532791.1 phage terminase small subunit P27 family -
  ACM3H0_RS07075 (ACM3H0_07075) - 1330244..1330582 (-) 339 WP_001247768.1 HNH endonuclease -
  ACM3H0_RS07080 (ACM3H0_07080) - 1330683..1330868 (+) 186 WP_001132272.1 type II toxin-antitoxin system HicA family toxin -
  ACM3H0_RS07085 (ACM3H0_07085) - 1330921..1331298 (+) 378 WP_000964195.1 type II toxin-antitoxin system HicB family antitoxin -
  ACM3H0_RS07090 (ACM3H0_07090) - 1331352..1331480 (-) 129 WP_017647279.1 hypothetical protein -
  ACM3H0_RS07100 (ACM3H0_07100) - 1332036..1332470 (-) 435 WP_000142570.1 ArpU family phage packaging/lysis transcriptional regulator -
  ACM3H0_RS07105 (ACM3H0_07105) - 1332861..1333127 (-) 267 WP_416055429.1 hypothetical protein -
  ACM3H0_RS07110 (ACM3H0_07110) - 1333145..1333444 (-) 300 WP_079218641.1 hypothetical protein -
  ACM3H0_RS07115 (ACM3H0_07115) - 1333465..1333965 (-) 501 WP_416055430.1 DUF1642 domain-containing protein -
  ACM3H0_RS07120 (ACM3H0_07120) - 1334228..1334668 (-) 441 WP_000612732.1 YopX family protein -
  ACM3H0_RS07125 (ACM3H0_07125) - 1334817..1335104 (-) 288 WP_071661630.1 nucleotide modification associated domain-containing protein -
  ACM3H0_RS07130 (ACM3H0_07130) - 1335116..1335463 (-) 348 WP_047200446.1 hypothetical protein -
  ACM3H0_RS07135 (ACM3H0_07135) - 1335453..1335929 (-) 477 WP_000143298.1 RusA family crossover junction endodeoxyribonuclease -
  ACM3H0_RS07140 (ACM3H0_07140) - 1335919..1336116 (-) 198 WP_000474006.1 hypothetical protein -
  ACM3H0_RS07145 (ACM3H0_07145) - 1336277..1337074 (-) 798 WP_047200445.1 PD-(D/E)XK nuclease-like domain-containing protein -
  ACM3H0_RS07150 (ACM3H0_07150) - 1337071..1338051 (-) 981 WP_047200444.1 recombinase RecT -
  ACM3H0_RS07155 (ACM3H0_07155) - 1338054..1338383 (-) 330 WP_047200443.1 hypothetical protein -
  ACM3H0_RS07160 (ACM3H0_07160) - 1338385..1338546 (-) 162 WP_079398808.1 hypothetical protein -
  ACM3H0_RS07165 (ACM3H0_07165) - 1338548..1338802 (-) 255 WP_047200442.1 hypothetical protein -
  ACM3H0_RS07170 (ACM3H0_07170) - 1338789..1339064 (-) 276 WP_000431575.1 hypothetical protein -
  ACM3H0_RS07175 (ACM3H0_07175) - 1339054..1339200 (-) 147 WP_165694407.1 hypothetical protein -
  ACM3H0_RS07180 (ACM3H0_07180) - 1339191..1339973 (-) 783 WP_000600243.1 ATP-binding protein -
  ACM3H0_RS07185 (ACM3H0_07185) - 1339960..1340718 (-) 759 WP_000546751.1 DnaD domain protein -
  ACM3H0_RS07190 (ACM3H0_07190) - 1340793..1341017 (-) 225 WP_047208982.1 hypothetical protein -
  ACM3H0_RS07195 (ACM3H0_07195) - 1341046..1341303 (-) 258 WP_016480517.1 hypothetical protein -
  ACM3H0_RS07200 (ACM3H0_07200) - 1341413..1341721 (+) 309 WP_001000651.1 hypothetical protein -
  ACM3H0_RS07205 (ACM3H0_07205) - 1341684..1341830 (-) 147 WP_001867241.1 hypothetical protein -
  ACM3H0_RS07210 (ACM3H0_07210) - 1341957..1342115 (-) 159 WP_000392121.1 hypothetical protein -
  ACM3H0_RS07215 (ACM3H0_07215) - 1342147..1342602 (-) 456 WP_001872799.1 ORF6C domain-containing protein -
  ACM3H0_RS07220 (ACM3H0_07220) - 1342599..1343521 (-) 923 Protein_1343 DUF3102 domain-containing protein -
  ACM3H0_RS07225 (ACM3H0_07225) - 1343539..1343754 (-) 216 WP_000164461.1 helix-turn-helix transcriptional regulator -
  ACM3H0_RS07230 (ACM3H0_07230) - 1343830..1344165 (+) 336 WP_000360289.1 hypothetical protein -
  ACM3H0_RS07235 (ACM3H0_07235) - 1344382..1345023 (+) 642 WP_001008979.1 hypothetical protein -
  ACM3H0_RS07240 (ACM3H0_07240) - 1345121..1345279 (-) 159 WP_001104143.1 hypothetical protein -
  ACM3H0_RS07245 (ACM3H0_07245) - 1345338..1345550 (+) 213 WP_000703681.1 hypothetical protein -
  ACM3H0_RS07250 (ACM3H0_07250) - 1345539..1345688 (-) 150 WP_017645151.1 hypothetical protein -
  ACM3H0_RS07255 (ACM3H0_07255) - 1346047..1346790 (+) 744 WP_416055431.1 XRE family transcriptional regulator -
  ACM3H0_RS07260 (ACM3H0_07260) - 1346792..1347349 (+) 558 WP_000891065.1 hypothetical protein -
  ACM3H0_RS07265 (ACM3H0_07265) - 1347521..1348414 (+) 894 WP_000426896.1 P63C domain-containing protein -
  ACM3H0_RS07270 (ACM3H0_07270) - 1348587..1349684 (+) 1098 WP_000570847.1 site-specific integrase -
  ACM3H0_RS07275 (ACM3H0_07275) hylB 1349964..1353182 (+) 3219 WP_000403417.1 hyaluronate lyase -
  ACM3H0_RS07280 (ACM3H0_07280) rfbB 1353234..1354280 (-) 1047 WP_000134279.1 dTDP-glucose 4,6-dehydratase -
  ACM3H0_RS07285 (ACM3H0_07285) - 1354487..1355080 (-) 594 WP_000139158.1 dTDP-4-dehydrorhamnose 3,5-epimerase family protein -

Sequence


Protein


Download         Length: 60 a.a.        Molecular weight: 7024.13 Da        Isoelectric Point: 4.1954

>NTDB_id=1097427 ACM3H0_RS06935 WP_000965649.1 1305277..1305459(-) (prx) [Streptococcus agalactiae strain M14]
MLYIDEFKEAIEKGYISSDTVMVVRKNGKIFDYVLPGEPVRLWEVATEEKVEEVLMELDK

Nucleotide


Download         Length: 183 bp        

>NTDB_id=1097427 ACM3H0_RS06935 WP_000965649.1 1305277..1305459(-) (prx) [Streptococcus agalactiae strain M14]
ATGTTATATATAGATGAGTTTAAAGAAGCGATTGAAAAAGGATATATCAGCAGTGATACAGTGATGGTTGTGCGTAAGAA
CGGAAAGATATTTGATTATGTGTTACCTGGTGAGCCTGTAAGATTGTGGGAAGTTGCGACAGAGGAAAAAGTGGAAGAAG
TGTTGATGGAATTAGATAAATAA

Domains



No domain identified.



Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  prx Streptococcus pyogenes MGAS315

68.333

100

0.683

  prx Streptococcus pyogenes MGAS315

65

100

0.65

  prx Streptococcus pyogenes MGAS315

65

100

0.65

  prx Streptococcus pyogenes MGAS8232

65

100

0.65

  prx Streptococcus pyogenes MGAS315

82.927

68.333

0.567

  prx Streptococcus pyogenes MGAS315

73.171

68.333

0.5

  prx Streptococcus pyogenes MGAS315

70.732

68.333

0.483


Multiple sequence alignment