Detailed information NTG1096542

Bioinformatically predicted

Overview

• Name: pilU
• Type: Machinery gene
• Locus tag: ACMXYW_RS13850
• Genome accession: NZ_CP180555
• Coordinates: 2970977..2972149 (+)
• Length: 390 a.a.
• NCBI ID: WP_415904439.1
• Uniprot ID: -
• Organism: Neptuniibacter sp. QD48_55
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2965977..2977149

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACMXYW_RS13830 (ACMXYW_13830)	-	2967297..2968067 (-)	771	WP_415904435.1	metal ABC transporter permease	-
ACMXYW_RS13835 (ACMXYW_13835)	-	2968067..2968966 (-)	900	WP_415904436.1	metal ABC transporter substrate-binding protein	-
ACMXYW_RS13840 (ACMXYW_13840)	-	2968947..2970056 (-)	1110	WP_415904437.1	hypothetical protein	-
ACMXYW_RS13845 (ACMXYW_13845)	-	2970172..2970825 (-)	654	WP_415904438.1	DUF1826 domain-containing protein	-
ACMXYW_RS13850 (ACMXYW_13850)	pilU	2970977..2972149 (+)	1173	WP_415904439.1	PilT/PilU family type 4a pilus ATPase	Machinery gene
ACMXYW_RS13855 (ACMXYW_13855)	-	2972356..2972739 (+)	384	WP_415904440.1	hypothetical protein	-
ACMXYW_RS13860 (ACMXYW_13860)	-	2972899..2973405 (+)	507	WP_415904441.1	YcxB family protein	-
ACMXYW_RS13865 (ACMXYW_13865)	-	2973440..2974048 (+)	609	WP_415904442.1	hypothetical protein	-
ACMXYW_RS13870 (ACMXYW_13870)	-	2974126..2974383 (+)	258	WP_415904443.1	hypothetical protein	-
ACMXYW_RS13875 (ACMXYW_13875)	fadA	2974604..2975779 (-)	1176	WP_415895155.1	acetyl-CoA C-acyltransferase FadA	-

Sequence

Protein

• Length: 390 a.a.
• Molecular weight: 43528.66 Da
• Isoelectric Point: 5.2290

>NTDB_id=1096542 ACMXYW_RS13850 WP_415904439.1 2970977..2972149(+) (pilU) [Neptuniibacter sp. QD48_55]
MEFKDYLTILAKRDGSDLYLTTGAPPCAKFEGKLTPLSKEPYKPGEIEAIANSLMDEQQRATFEEELEMNLAYSIPKVAR
YRINIFKQRNQYSLVARNIKADIPKMEDLGLPPVLKDVIMEKRGLVLFVGATGSGKSTSLAALIDHRNRNSGGHIITIED
PIEFVHNHRKSLINQREVGVDTRNFHSALKNALRQAPDVILIGEIRDQETMEQCLTYAETGHLAISTLHANNANQAIDRI
INFFPQARHKQIFHDLALNLKAVVSQRLIPTIEGKRCAAIEILLGTSSIQELIMKGDVKGIKEVMSKGSDTTGMQTFDDS
LFKLFDEGKITQDQAIVNADSANDMRLRMNLAVVDDKAEKTDAAPEPEKQSFDEDNPLAGIKLLDEDEEV

Nucleotide

• Length: 1173 bp

>NTDB_id=1096542 ACMXYW_RS13850 WP_415904439.1 2970977..2972149(+) (pilU) [Neptuniibacter sp. QD48_55]
ATGGAATTTAAGGATTACCTTACGATTTTGGCGAAACGTGACGGCTCCGACCTTTACCTAACTACCGGCGCTCCACCTTG
TGCAAAATTTGAAGGTAAATTAACGCCATTAAGTAAAGAGCCTTATAAACCTGGTGAGATCGAAGCAATCGCCAATTCCT
TAATGGATGAGCAGCAACGCGCTACCTTCGAAGAAGAGCTAGAGATGAACTTGGCTTATTCCATTCCGAAAGTAGCTCGG
TACCGTATCAATATATTTAAACAACGTAACCAATACTCACTGGTCGCGCGTAATATCAAAGCCGATATTCCAAAAATGGA
AGACTTAGGCCTACCGCCAGTCCTTAAAGATGTGATTATGGAGAAACGCGGCTTAGTACTGTTTGTTGGCGCGACAGGTT
CGGGTAAATCGACATCACTAGCGGCACTGATTGATCACCGTAACCGTAATAGCGGTGGTCATATCATCACCATTGAAGAC
CCGATCGAGTTTGTCCACAACCACCGAAAATCACTGATCAACCAGCGAGAAGTCGGGGTTGATACTCGTAACTTCCATAG
CGCTCTGAAAAACGCCCTCCGCCAAGCACCTGATGTGATTTTGATCGGCGAGATCCGAGATCAGGAAACCATGGAGCAGT
GCCTGACCTATGCAGAAACAGGTCACTTAGCGATCTCCACACTACATGCCAACAACGCTAACCAAGCAATTGATCGTATT
ATTAACTTCTTTCCGCAAGCACGGCATAAACAGATCTTCCACGACCTTGCGCTTAACCTTAAAGCCGTGGTTTCTCAGCG
TCTGATTCCAACCATTGAAGGTAAACGCTGTGCTGCCATTGAGATACTTCTAGGTACTTCCAGTATCCAAGAACTGATAA
TGAAAGGTGATGTGAAAGGGATCAAAGAGGTAATGTCTAAAGGTTCTGATACCACCGGCATGCAAACCTTTGATGACTCC
CTATTCAAACTCTTTGACGAAGGTAAGATCACGCAAGACCAAGCTATTGTTAATGCCGACTCTGCCAACGATATGCGCCT
TCGAATGAACCTTGCTGTAGTGGATGACAAAGCTGAAAAGACCGATGCAGCGCCTGAACCAGAAAAGCAGTCCTTCGATG
AAGATAATCCGCTAGCTGGGATTAAGCTATTGGATGAAGACGAAGAGGTTTGA

Domains

Predicted by InterproScan.

• Type II/IV secretion system protein (T2SSE) (113-269)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilU	Pseudomonas stutzeri DSM 10701	51.33	96.41	0.495
pilU	Acinetobacter baylyi ADP1	51.412	90.769	0.467
pilU	Vibrio cholerae strain A1552	45.938	91.538	0.421
pilT	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	42.507	94.103	0.4
pilT	Pseudomonas aeruginosa PAK	42.687	85.897	0.367
pilT	Pseudomonas stutzeri DSM 10701	42.09	85.897	0.362