Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicR   Type   Regulator
Locus tag   ACGHT2_RS07900 Genome accession   NZ_AP031455
Coordinates   1508743..1509453 (-) Length   236 a.a.
NCBI ID   WP_003065770.1    Uniprot ID   A0AAW6YI35
Organism   Streptococcus pasteurianus strain k46-0107-A9     
Function   repress comCDE expression; repress comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1503743..1514453
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACGHT2_RS07885 (K460107A9_14670) rnc 1505648..1506334 (-) 687 WP_270619892.1 ribonuclease III -
  ACGHT2_RS07890 (K460107A9_14680) vicX 1506588..1507397 (-) 810 WP_003065766.1 MBL fold metallo-hydrolase Regulator
  ACGHT2_RS07895 (K460107A9_14690) vicK 1507398..1508750 (-) 1353 WP_390578273.1 cell wall metabolism sensor histidine kinase VicK Regulator
  ACGHT2_RS07900 (K460107A9_14700) vicR 1508743..1509453 (-) 711 WP_003065770.1 response regulator YycF Regulator
  ACGHT2_RS07905 (K460107A9_14710) - 1509758..1510522 (+) 765 WP_003065772.1 amino acid ABC transporter ATP-binding protein -
  ACGHT2_RS07910 (K460107A9_14720) - 1510533..1511345 (+) 813 WP_390578276.1 transporter substrate-binding domain-containing protein -
  ACGHT2_RS07915 (K460107A9_14730) - 1511362..1512066 (+) 705 WP_117575586.1 amino acid ABC transporter permease -
  ACGHT2_RS07920 (K460107A9_14740) - 1512078..1512725 (+) 648 WP_003065777.1 amino acid ABC transporter permease -
  ACGHT2_RS07925 (K460107A9_14750) - 1512818..1513426 (-) 609 WP_268700241.1 TVP38/TMEM64 family protein -
  ACGHT2_RS07930 (K460107A9_14760) - 1513674..1513976 (-) 303 WP_003065782.1 PepSY domain-containing protein -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 27119.93 Da        Isoelectric Point: 4.7040

>NTDB_id=109625 ACGHT2_RS07900 WP_003065770.1 1508743..1509453(-) (vicR) [Streptococcus pasteurianus strain k46-0107-A9]
MKKILIVDDEKPISDIIKFNLAKEGYETVTAFDGREAITKFEEENPDLIILDLMLPELDGLEVAKEVRKTSHIPIIMLSA
KDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRRTENIETAVAEENASASNSEITIGDLKILPDAFVAQKRGEDIE
LTHREFELLHHLATHMGQVMTREYLLETVWGYDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYMKSYE

Nucleotide


Download         Length: 711 bp        

>NTDB_id=109625 ACGHT2_RS07900 WP_003065770.1 1508743..1509453(-) (vicR) [Streptococcus pasteurianus strain k46-0107-A9]
ATGAAAAAAATTCTTATCGTGGATGATGAAAAACCAATTTCGGATATTATTAAATTTAATTTAGCTAAAGAAGGTTATGA
AACTGTAACGGCTTTTGATGGTCGTGAAGCTATTACAAAGTTTGAGGAAGAAAATCCAGATTTAATTATCCTGGATTTGA
TGTTGCCAGAGTTGGATGGGCTTGAAGTGGCTAAGGAAGTTCGCAAGACAAGTCATATTCCAATCATCATGTTGTCTGCT
AAGGATAGCGAGTTTGATAAAGTTATCGGTCTTGAAATTGGTGCAGATGACTATGTGACCAAACCATTTTCAAACCGTGA
ATTGTTGGCGCGTGTTAAAGCGCACCTTCGTCGTACAGAAAATATTGAAACAGCAGTTGCTGAAGAAAATGCTTCGGCTT
CAAATTCAGAAATCACAATTGGCGACTTAAAAATTTTACCAGATGCCTTTGTAGCACAAAAACGTGGTGAAGATATCGAA
TTAACACACCGTGAGTTTGAATTGCTTCATCATTTGGCAACTCATATGGGACAAGTCATGACTCGTGAATATCTTTTGGA
AACCGTTTGGGGCTATGATTATTTTGGTGATGTGCGTACGGTTGACGTAACGATTCGTCGTTTACGCGAAAAAATTGAAG
ATACACCAAGCCGTCCAGAATATATTTTGACACGTCGGGGTGTTGGGTACTACATGAAGTCATATGAATGA

Domains

Predicted by InterproScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(156-231)

Response regulator receiver domain (Response_reg)

(4-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicR Streptococcus mutans UA159

90.678

100

0.907
  micA Streptococcus pneumoniae Cp1015

77.35

99.153

0.767
  covR Streptococcus salivarius strain HSISS4

47.414

98.305

0.466
  covR Lactococcus lactis subsp. lactis strain DGCC12653

45.69

98.305

0.449
  scnR Streptococcus mutans UA159

37.288

100

0.373

Multiple sequence alignment