Detailed information    

insolico Bioinformatically predicted

Overview

Name   prx   Type   Regulator
Locus tag   ACGHT2_RS07355 Genome accession   NZ_AP031455
Coordinates   1402163..1402342 (-) Length   59 a.a.
NCBI ID   WP_156672679.1    Uniprot ID   -
Organism   Streptococcus pasteurianus strain k46-0107-A9     
Function   Inhibit ComR activation (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 1402416..1412952 1402163..1402342 flank 74


Gene organization within MGE regions


Location: 1402163..1412952
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACGHT2_RS07355 (K460107A9_13610) prx 1402163..1402342 (-) 180 WP_156672679.1 Paratox Regulator
  ACGHT2_RS07360 (K460107A9_13620) - 1402416..1402925 (-) 510 WP_156672678.1 PBECR4 domain-containing protein -
  ACGHT2_RS07365 (K460107A9_13630) - 1403861..1404400 (+) 540 WP_156672677.1 hypothetical protein -
  ACGHT2_RS07370 (K460107A9_13640) - 1404718..1404930 (-) 213 WP_156672676.1 hypothetical protein -
  ACGHT2_RS07375 (K460107A9_13650) - 1404991..1405452 (-) 462 WP_156672682.1 hypothetical protein -
  ACGHT2_RS07380 (K460107A9_13660) - 1405747..1406178 (-) 432 WP_390578225.1 ArpU family phage packaging/lysis transcriptional regulator -
  ACGHT2_RS07385 (K460107A9_13670) - 1406199..1406789 (-) 591 WP_390578227.1 hypothetical protein -
  ACGHT2_RS07390 (K460107A9_13690) - 1407036..1407338 (-) 303 WP_316595413.1 hypothetical protein -
  ACGHT2_RS07395 (K460107A9_13710) - 1407948..1409351 (-) 1404 WP_390578229.1 VapE domain-containing protein -
  ACGHT2_RS07400 (K460107A9_13720) - 1409326..1409874 (-) 549 WP_390578231.1 hypothetical protein -
  ACGHT2_RS07405 (K460107A9_13730) - 1409879..1410145 (-) 267 WP_045797981.1 hypothetical protein -
  ACGHT2_RS07410 (K460107A9_13740) - 1410147..1410506 (-) 360 WP_390578233.1 hypothetical protein -
  ACGHT2_RS07415 (K460107A9_13750) - 1410518..1410712 (-) 195 WP_390578235.1 hypothetical protein -
  ACGHT2_RS07420 (K460107A9_13760) - 1410709..1411089 (-) 381 WP_390578237.1 hypothetical protein -
  ACGHT2_RS07425 (K460107A9_13770) - 1411331..1411501 (-) 171 WP_390578239.1 hypothetical protein -
  ACGHT2_RS07430 (K460107A9_13780) - 1411779..1411967 (-) 189 WP_039696597.1 DNA-binding protein -
  ACGHT2_RS07435 (K460107A9_13790) - 1412140..1412952 (+) 813 WP_390578240.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 59 a.a.        Molecular weight: 7056.09 Da        Isoelectric Point: 4.1370

>NTDB_id=109621 ACGHT2_RS07355 WP_156672679.1 1402163..1402342(-) (prx) [Streptococcus pasteurianus strain k46-0107-A9]
MLYYDEFKEVIEYIKGDTVQIVRKNGIVFDYVLPNEPIKPYEVVTTEKVSDVLEELKEW

Nucleotide


Download         Length: 180 bp        

>NTDB_id=109621 ACGHT2_RS07355 WP_156672679.1 1402163..1402342(-) (prx) [Streptococcus pasteurianus strain k46-0107-A9]
ATGCTGTATTATGATGAATTTAAAGAAGTGATAGAATATATAAAGGGGGATACTGTTCAGATTGTTAGAAAGAATGGGAT
AGTATTTGATTATGTTCTCCCTAATGAGCCTATAAAACCTTACGAGGTGGTTACCACTGAAAAAGTGTCAGACGTTTTGG
AAGAGCTAAAAGAATGGTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  prx Streptococcus pyogenes MGAS315

67.241

98.305

0.661
  prx Streptococcus pyogenes MGAS8232

65.517

98.305

0.644
  prx Streptococcus pyogenes MGAS315

63.793

98.305

0.627
  prx Streptococcus pyogenes MGAS315

56.897

98.305

0.559
  prx Streptococcus pyogenes MGAS315

66.667

71.186

0.475
  prx Streptococcus pyogenes MGAS315

68.293

69.492

0.475
  prx Streptococcus pyogenes MGAS315

65.854

69.492

0.458

Multiple sequence alignment