Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   ACMXYJ_RS31440 Genome accession   NZ_CP180480
Coordinates   6793868..6795958 (-) Length   696 a.a.
NCBI ID   WP_415758252.1    Uniprot ID   -
Organism   Pseudomonas sp. LT1P18     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6788868..6800958
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMXYJ_RS31425 - 6790487..6792082 (-) 1596 WP_415758250.1 AAA family ATPase -
  ACMXYJ_RS31430 aroB 6792093..6793193 (-) 1101 WP_415758251.1 3-dehydroquinate synthase -
  ACMXYJ_RS31435 aroK 6793345..6793863 (-) 519 WP_010464421.1 shikimate kinase AroK -
  ACMXYJ_RS31440 pilQ 6793868..6795958 (-) 2091 WP_415758252.1 type IV pilus secretin PilQ Machinery gene
  ACMXYJ_RS31445 - 6795972..6796499 (-) 528 WP_415758253.1 pilus assembly protein PilP -
  ACMXYJ_RS31450 pilO 6796496..6797119 (-) 624 WP_415758254.1 type 4a pilus biogenesis protein PilO -
  ACMXYJ_RS31455 - 6797116..6797682 (-) 567 WP_415758255.1 PilN domain-containing protein -
  ACMXYJ_RS31460 comM 6797682..6798746 (-) 1065 WP_415758256.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 696 a.a.        Molecular weight: 75409.76 Da        Isoelectric Point: 5.5835

>NTDB_id=1096081 ACMXYJ_RS31440 WP_415758252.1 6793868..6795958(-) (pilQ) [Pseudomonas sp. LT1P18]
MNRIFSTFGISLWIALLSPMVLAANLKALDVAALPGDRVELKLSFDGPPPPPHGYTTESPARIALDLPGVVSQLKSKNRE
LGGGNARSATVVEAKDRTRLIINLTQLTPYNTRVEGNTLFVVVGQGANKTASSPAPKTPRAATATPASAKAFAPVGKAIR
GVDFQRGTQGEGNVVIDLSDPSIAPDIQERDGKIILGFARTQLPEPLRVRLDVKDFATPVQFVNASATGDRAMIVIEPGG
AFDYSTYQTDNKLTVSIRPMTVDDLQKRNTERFAYTGEKLSLNFQDIDVRSVLQLIADFTNLNLVASDTVQGGITLRLQN
VPWDQALDLVLKTKGLDKRKIGNVLLVAPADEIAARERQELESQKQIADLAPLRRELLQVNYAKAADIAKLFQSVTSAEA
KADERGSITVDERTNNIIAYQTQDRLDELRRIVAQLDIPVRQVMIEARIVEANVDYDKSLGVRWGGSIQNKGNWNTSGVS
NNGENASSTIGTPGSTSTNSPFVDLGTAANTSGLGIAFITDNVLLDLELTAMEKTGNGEIVSQPKVVTSDKETAKILKGT
EIPYQEASSSGATSVSFKEASLSLEVTPQITPDNRIIMEVKVTKDEPDYLNKVQDVPPIKKNEVNAKVLVNDGETIVIGG
VFSNTQSKVVDKVPFLGDVPYLGRLFRRDVVSEKKSELLVFLTPRIMNNQAIAVSR

Nucleotide


Download         Length: 2091 bp        

>NTDB_id=1096081 ACMXYJ_RS31440 WP_415758252.1 6793868..6795958(-) (pilQ) [Pseudomonas sp. LT1P18]
ATGAACAGGATTTTCTCAACCTTCGGTATTTCGCTATGGATAGCGTTGCTGTCGCCGATGGTACTAGCGGCCAACCTCAA
AGCGCTGGATGTCGCCGCGCTGCCGGGGGACCGCGTCGAGTTGAAGTTATCGTTCGATGGGCCGCCACCGCCGCCCCATG
GTTACACCACTGAATCGCCTGCGCGGATTGCGCTGGACCTGCCTGGCGTCGTCAGTCAGCTAAAAAGCAAAAATCGTGAA
CTGGGCGGCGGAAATGCCCGCAGCGCCACGGTGGTGGAAGCCAAGGACCGTACGCGGCTGATCATCAATTTGACCCAGTT
GACCCCATACAACACACGGGTCGAAGGCAACACGCTGTTCGTGGTGGTCGGCCAAGGTGCCAACAAAACGGCCTCCAGCC
CGGCGCCCAAAACGCCACGCGCAGCCACTGCAACGCCAGCCTCGGCGAAAGCCTTTGCGCCAGTGGGCAAGGCCATCCGG
GGTGTGGATTTCCAGCGCGGCACCCAGGGCGAAGGCAATGTGGTCATCGATCTGTCGGATCCTTCCATCGCCCCGGACAT
TCAGGAGCGCGACGGCAAGATCATCCTCGGTTTCGCCAGGACCCAATTGCCTGAACCGTTGCGTGTCCGTCTGGACGTCA
AGGATTTCGCCACGCCGGTGCAGTTCGTCAACGCCAGCGCCACGGGCGATCGGGCCATGATCGTTATTGAACCCGGCGGC
GCCTTCGATTATTCGACTTACCAGACCGACAACAAGCTGACCGTCAGCATCCGGCCGATGACCGTCGATGACTTGCAGAA
ACGCAACACCGAACGCTTCGCCTACACCGGTGAAAAGCTCTCGCTGAATTTTCAGGACATCGATGTGCGTTCGGTGCTGC
AACTGATCGCCGATTTCACCAACCTCAATCTGGTGGCCAGCGACACGGTGCAGGGCGGCATCACGCTGCGCTTGCAGAAC
GTACCGTGGGATCAGGCGCTGGATCTGGTGTTGAAAACCAAGGGCCTGGATAAACGCAAGATCGGTAATGTTTTGCTGGT
GGCTCCGGCCGATGAAATCGCTGCCCGCGAGCGCCAGGAGCTTGAGTCGCAGAAGCAAATCGCCGACCTGGCGCCCCTGC
GTCGCGAGCTGTTGCAGGTCAACTATGCCAAAGCTGCCGATATCGCCAAGCTCTTCCAGTCGGTGACCAGTGCCGAGGCA
AAAGCCGACGAGCGGGGCTCGATCACGGTGGATGAGCGGACCAACAACATCATTGCCTACCAGACCCAGGATCGCCTTGA
CGAGCTCCGCCGTATCGTCGCGCAACTGGATATCCCGGTGCGTCAGGTGATGATCGAGGCGCGAATCGTCGAAGCCAACG
TCGACTATGACAAAAGCCTCGGCGTGCGCTGGGGAGGATCGATCCAGAACAAGGGCAACTGGAACACCTCGGGCGTCAGT
AATAATGGGGAAAATGCTTCATCGACCATCGGTACGCCTGGCAGCACCAGCACCAACTCGCCGTTCGTCGACCTGGGCAC
CGCCGCCAACACCTCGGGGCTCGGCATCGCCTTCATCACTGACAATGTGCTGCTGGATCTCGAGCTGACGGCCATGGAGA
AGACCGGCAACGGCGAAATCGTCTCGCAGCCCAAGGTGGTCACGTCCGACAAGGAAACCGCGAAAATCCTCAAGGGCACG
GAGATTCCCTACCAGGAAGCCAGCTCCAGCGGTGCTACCTCGGTGTCGTTCAAGGAGGCTTCGCTGTCTCTGGAAGTGAC
GCCCCAGATCACTCCGGACAACCGGATCATCATGGAGGTCAAGGTCACCAAGGACGAACCGGACTACCTGAACAAGGTGC
AGGACGTACCGCCGATCAAGAAAAACGAGGTCAATGCCAAGGTCCTGGTCAACGACGGCGAGACCATCGTGATTGGCGGG
GTTTTCTCAAATACTCAGAGCAAGGTTGTAGATAAGGTGCCATTTCTCGGCGATGTGCCGTATCTTGGCCGCCTTTTCCG
GCGTGACGTGGTTTCGGAGAAAAAATCCGAGCTGTTGGTGTTTCTCACACCGCGTATCATGAATAACCAGGCGATTGCTG
TGAGTCGTTGA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(531-687)

Bacterial type II/III secretion system short domain (Secretin_N)

(377-442)

Secretin and TonB N terminus short domain (STN)

(303-349)

AMIN domain (AMIN)

(37-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Pseudomonas aeruginosa PAK

73.706

100

0.757
  comQ Acinetobacter baylyi ADP1

40.548

100

0.425
  pilQ Acinetobacter baumannii strain A118

38.318

100

0.412
  pilQ Acinetobacter baumannii D1279779

38.318

100

0.412
  pilQ Legionella pneumophila strain ERS1305867

37.962

97.27

0.369
  pilQ Legionella pneumophila strain Lp02

37.814

97.27

0.368

Multiple sequence alignment