Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ACMXYJ_RS31460 Genome accession   NZ_CP180480
Coordinates   6797682..6798746 (-) Length   354 a.a.
NCBI ID   WP_415758256.1    Uniprot ID   -
Organism   Pseudomonas sp. LT1P18     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6792682..6803746
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMXYJ_RS31435 aroK 6793345..6793863 (-) 519 WP_010464421.1 shikimate kinase AroK -
  ACMXYJ_RS31440 pilQ 6793868..6795958 (-) 2091 WP_415758252.1 type IV pilus secretin PilQ Machinery gene
  ACMXYJ_RS31445 - 6795972..6796499 (-) 528 WP_415758253.1 pilus assembly protein PilP -
  ACMXYJ_RS31450 pilO 6796496..6797119 (-) 624 WP_415758254.1 type 4a pilus biogenesis protein PilO -
  ACMXYJ_RS31455 - 6797116..6797682 (-) 567 WP_415758255.1 PilN domain-containing protein -
  ACMXYJ_RS31460 comM 6797682..6798746 (-) 1065 WP_415758256.1 pilus assembly protein PilM Machinery gene
  ACMXYJ_RS31465 - 6798965..6801412 (+) 2448 WP_415760833.1 penicillin-binding protein 1A -
  ACMXYJ_RS31470 - 6801654..6802922 (-) 1269 WP_008149557.1 malic enzyme-like NAD(P)-binding protein -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 38147.59 Da        Isoelectric Point: 4.6726

>NTDB_id=1096082 ACMXYJ_RS31460 WP_415758256.1 6797682..6798746(-) (comM) [Pseudomonas sp. LT1P18]
MLGLFNKKANTLLGIDISSTSVKLLELSRQGDRYRVEAYAVEPLPTNAVVEKNIAELEGVGQALARVLLKARTNLKNVAV
AVAGSAVITKTIEMDAGLSDDEMENQLKIEADQYIPYPLDEVAIDFEVQGVSARNPERVNVLLAACRKENVEVREAALAL
AGLTARVVDVEAYALERSFGLLASQLAASQDRLTVAVVDIGATMTTLSVLHQGRIIYTREQLFGGRQLTEEIQRRYGLTL
EQAGLAKKQGGLPDDYVSEVLQPFRDALVQQVSRSLQFFFASGQYDSVDHILLAGGTASVPGLDRLIEQRLGTPTQVANP
FSDMALSSKVNAGALASDAPALMIACGLALRSFD

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=1096082 ACMXYJ_RS31460 WP_415758256.1 6797682..6798746(-) (comM) [Pseudomonas sp. LT1P18]
GTGCTAGGACTCTTCAATAAAAAAGCCAATACGCTTCTGGGGATCGACATCAGCTCCACGTCGGTCAAGCTTCTGGAGCT
AAGCCGCCAAGGCGACCGTTATCGGGTCGAGGCCTATGCGGTGGAACCTTTGCCCACCAATGCGGTGGTCGAGAAAAATA
TCGCCGAGCTCGAAGGCGTAGGGCAGGCACTCGCGCGCGTGCTGCTCAAGGCCAGAACCAACCTCAAGAACGTCGCCGTG
GCGGTGGCCGGTTCGGCGGTGATCACCAAGACCATCGAGATGGACGCCGGTCTTTCCGACGACGAAATGGAAAACCAGCT
GAAGATCGAGGCTGATCAATACATCCCTTATCCATTGGATGAAGTGGCCATCGACTTTGAGGTCCAGGGCGTTTCTGCGC
GCAACCCCGAGCGAGTCAATGTGCTGCTGGCGGCCTGTCGCAAGGAAAACGTCGAGGTCCGGGAAGCGGCCCTGGCCCTG
GCCGGCCTGACAGCTCGCGTGGTCGACGTCGAGGCTTATGCGCTGGAGCGTTCCTTCGGATTGCTGGCGAGTCAGCTGGC
GGCTTCTCAGGATCGTCTGACGGTGGCGGTGGTCGATATCGGCGCTACCATGACCACCCTGAGCGTGCTGCATCAGGGGC
GGATCATCTACACCCGCGAGCAATTGTTCGGCGGTCGTCAACTGACGGAAGAAATCCAGCGACGTTATGGCCTGACCCTT
GAGCAGGCGGGGCTGGCGAAGAAGCAGGGTGGTTTGCCGGACGATTACGTCAGTGAGGTGTTGCAGCCGTTTCGCGATGC
GCTGGTGCAGCAGGTGTCGCGTTCGTTGCAGTTTTTCTTCGCCTCCGGTCAGTACGACTCGGTTGATCACATCCTGCTGG
CCGGCGGTACCGCCTCGGTCCCGGGGCTGGACCGGTTGATCGAGCAACGATTGGGTACGCCGACGCAAGTGGCCAACCCC
TTCTCCGACATGGCCCTGAGCAGCAAGGTCAACGCCGGTGCCCTGGCCAGCGATGCGCCGGCACTGATGATCGCCTGCGG
GCTGGCCCTCAGGAGTTTCGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(14-353)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Acinetobacter nosocomialis M2

57.062

100

0.571
  pilM Acinetobacter baumannii D1279779

56.78

100

0.568
  comM Acinetobacter baylyi ADP1

54.52

100

0.545
  pilM Legionella pneumophila strain ERS1305867

49.577

100

0.497

Multiple sequence alignment