Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   ACMYQ0_RS15330 Genome accession   NZ_CP180477
Coordinates   3310236..3312329 (-) Length   697 a.a.
NCBI ID   WP_415755945.1    Uniprot ID   -
Organism   Pseudomonas leptonychotis strain CCM 8849     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3305236..3317329
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMYQ0_RS15315 - 3306988..3308547 (-) 1560 WP_415753682.1 SPOR domain-containing protein -
  ACMYQ0_RS15320 aroB 3308558..3309661 (-) 1104 WP_405121184.1 3-dehydroquinate synthase -
  ACMYQ0_RS15325 aroK 3309713..3310231 (-) 519 WP_136663369.1 shikimate kinase AroK -
  ACMYQ0_RS15330 pilQ 3310236..3312329 (-) 2094 WP_415755945.1 type IV pilus secretin PilQ Machinery gene
  ACMYQ0_RS15335 pilP 3312385..3312909 (-) 525 WP_415753683.1 type 4a pilus biogenesis lipoprotein PilP -
  ACMYQ0_RS15340 pilO 3312906..3313529 (-) 624 WP_415753684.1 type 4a pilus biogenesis protein PilO -
  ACMYQ0_RS15345 - 3313526..3314098 (-) 573 WP_415753685.1 PilN domain-containing protein -
  ACMYQ0_RS15350 pilM 3314098..3315162 (-) 1065 WP_136663373.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 697 a.a.        Molecular weight: 74948.97 Da        Isoelectric Point: 4.8258

>NTDB_id=1095989 ACMYQ0_RS15330 WP_415755945.1 3310236..3312329(-) (pilQ) [Pseudomonas leptonychotis strain CCM 8849]
MNNNFSFLKISLLAVIFPSCLFAADLQSLDVAALPGDRVELKLTFDEPILAPRGYTIEQPARIALDLPGVTNKLGAKNKE
LGVGNARSVTVVEAKDRTRLIINLTNLAPYSTRTEGRVLYVVVGEGAKDSGLVAQSSSVVVPAVAQAKNYALQGQAIKNI
DFQRGEQGEGNVVITLSDASVSPDIQDQGGKIRLNFTKTQLPESLRVRLDVKDFATPVQFVSASESNGQANIVIEPSGSY
DYLAYQADNKLTLSIKPLTQDEVDKRKSESFAYSGEKLSLNFQDIDVRSVLQLIADFTDLNLVASDTVSGNITLRLQNVP
WDQALDLVLKTKGLDKRKVGNVLLVAPADEIAARERQELEAQKQIAELAPLRRELIQVNYAKASDMAKLFQSVTSADGAV
DERGSVTVDDRTNSIIAYQTQNRLDELRRIVAQLDIPVRQVMIEARIVEASVDYSKALGVSWRGASVGDTSYVVSGRGGD
RVGAPGFGQNSGVQNPTPSLGNFVDMGAAGATSGIGIGFITDNAILDLELSALEKSGNGEIISQPKVVTSDKETAKILKG
SKIPYPEASSSGAATTAFAEANLSLEVTPQITPDNRVIIEVKVNKDAADFSNQVEGKPTILTNEVNAKVLVSDGETIVIG
GVFSNTQSKAVDKVPFLGDVPFVGRLFRRDVVTDNKSELLIFLTPRIMNNQAIAVSR

Nucleotide


Download         Length: 2094 bp        

>NTDB_id=1095989 ACMYQ0_RS15330 WP_415755945.1 3310236..3312329(-) (pilQ) [Pseudomonas leptonychotis strain CCM 8849]
ATGAACAACAACTTTTCGTTTTTAAAAATTTCTTTATTGGCCGTAATTTTTCCCTCATGTCTTTTTGCGGCGGACTTGCA
GTCGCTCGATGTGGCTGCTTTGCCAGGCGATCGAGTTGAGTTGAAGCTCACGTTCGATGAGCCGATTCTTGCTCCGCGTG
GCTATACAATTGAGCAGCCTGCGCGCATTGCTCTTGATTTGCCGGGTGTGACGAATAAGTTGGGGGCTAAAAATAAAGAG
CTGGGTGTAGGTAATGCACGTAGTGTCACTGTTGTAGAAGCTAAAGATCGAACTCGTCTGATTATTAATTTGACAAATCT
TGCACCGTACAGCACTCGCACAGAGGGGCGTGTTCTTTATGTTGTGGTGGGGGAAGGGGCCAAAGATTCAGGTTTAGTTG
CGCAGTCGTCCAGTGTAGTAGTTCCTGCTGTTGCTCAAGCAAAGAACTATGCTTTGCAAGGGCAGGCCATTAAGAATATT
GATTTTCAGCGCGGTGAACAAGGAGAGGGTAACGTAGTTATTACGCTATCTGATGCTTCTGTAAGTCCAGATATCCAAGA
TCAAGGTGGTAAGATTCGGTTGAACTTCACCAAGACACAGTTGCCGGAGTCATTGCGTGTTCGTTTGGACGTAAAAGATT
TTGCGACGCCTGTACAGTTTGTGAGCGCGAGTGAGTCAAATGGTCAAGCGAACATCGTAATTGAACCGTCCGGGAGTTAT
GACTACCTAGCGTACCAAGCTGACAATAAGTTGACTTTAAGCATAAAGCCATTAACGCAAGATGAGGTTGATAAGCGAAA
GAGCGAAAGCTTTGCTTATAGTGGTGAGAAGCTGTCCTTGAATTTTCAGGATATTGATGTTCGCTCAGTTCTTCAGTTGA
TTGCTGATTTTACTGATCTGAACTTGGTTGCTAGTGATACTGTATCGGGGAATATCACGCTGCGTCTGCAGAATGTCCCT
TGGGATCAAGCGTTAGATTTGGTGCTTAAAACTAAGGGGCTTGATAAACGCAAGGTCGGTAATGTGCTTCTGGTTGCTCC
TGCCGATGAAATTGCTGCTCGAGAGCGTCAGGAGTTAGAAGCGCAAAAGCAGATAGCAGAACTCGCCCCTCTTCGTCGTG
AGCTGATCCAAGTTAACTACGCCAAAGCATCGGACATGGCGAAGTTGTTCCAGTCTGTAACCAGTGCAGATGGCGCAGTA
GATGAGCGCGGATCAGTTACCGTTGATGATCGAACCAACAGCATAATTGCTTATCAAACGCAGAATCGGCTTGATGAGCT
GCGTCGTATAGTTGCGCAGCTTGATATACCGGTACGACAGGTAATGATTGAAGCGCGTATCGTTGAGGCTAGCGTTGATT
ATAGTAAGGCCCTTGGAGTGAGCTGGCGTGGTGCCAGTGTTGGTGACACAAGCTATGTTGTCAGTGGTCGTGGTGGGGAT
CGTGTCGGGGCGCCCGGTTTTGGTCAGAATTCTGGCGTTCAAAATCCTACGCCTTCACTAGGTAATTTTGTGGATATGGG
CGCAGCTGGTGCAACGTCTGGTATTGGTATTGGTTTTATTACAGATAATGCAATTCTGGACCTAGAGCTATCCGCCTTGG
AGAAAAGTGGTAATGGCGAGATTATTTCACAGCCTAAAGTTGTGACTTCTGATAAGGAAACTGCAAAAATCTTAAAAGGT
TCAAAAATTCCTTACCCTGAGGCTTCGTCAAGTGGTGCGGCTACCACTGCTTTTGCTGAAGCAAATCTTTCGCTGGAAGT
GACCCCGCAAATTACTCCAGATAATCGAGTGATCATTGAGGTTAAAGTCAATAAAGATGCTGCTGACTTTTCTAATCAAG
TAGAGGGCAAGCCAACTATTCTCACAAACGAAGTGAATGCAAAAGTTCTAGTAAGTGATGGTGAAACGATTGTTATCGGC
GGTGTTTTTAGTAATACGCAGTCAAAGGCTGTAGATAAGGTTCCGTTTCTTGGCGATGTCCCGTTTGTTGGTCGTCTTTT
TAGGCGTGATGTTGTAACGGATAACAAGTCTGAGCTTCTTATTTTTCTTACCCCGCGCATCATGAACAATCAAGCTATCG
CGGTGAGTCGTTGA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(532-688)

Secretin and TonB N terminus short domain (STN)

(301-347)

AMIN domain (AMIN)

(39-111)

Bacterial type II/III secretion system short domain (Secretin_N)

(375-440)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Pseudomonas aeruginosa PAK

71.588

100

0.737
  pilQ Acinetobacter baumannii strain A118

40.164

100

0.422
  pilQ Acinetobacter baumannii D1279779

40.164

100

0.422
  comQ Acinetobacter baylyi ADP1

41.449

98.996

0.41
  pilQ Legionella pneumophila strain ERS1305867

38.166

96.987

0.37
  pilQ Legionella pneumophila strain Lp02

38.018

96.987

0.369

Multiple sequence alignment