Detailed information    

insolico Bioinformatically predicted

Overview


Name   clpP   Type   Regulator
Locus tag   ACLBKY_RS16045 Genome accession   NZ_CP180233
Coordinates   3097777..3098373 (+) Length   198 a.a.
NCBI ID   WP_024719872.1    Uniprot ID   A0A2G8ISB7
Organism   Bacillus altitudinis strain Ba 5     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context


Location: 3092777..3103373
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLBKY_RS16010 (ACLBKY_16010) - 3093242..3093706 (-) 465 WP_073412777.1 DinB family protein -
  ACLBKY_RS16015 (ACLBKY_16015) - 3094390..3094788 (-) 399 WP_047203867.1 hypothetical protein -
  ACLBKY_RS16020 (ACLBKY_16020) - 3094775..3095107 (-) 333 WP_047203866.1 hypothetical protein -
  ACLBKY_RS16025 (ACLBKY_16025) - 3095104..3095742 (-) 639 WP_144683556.1 hypothetical protein -
  ACLBKY_RS16030 (ACLBKY_16030) - 3095735..3096334 (-) 600 WP_047203864.1 hypothetical protein -
  ACLBKY_RS16035 (ACLBKY_16035) - 3096589..3097227 (-) 639 WP_414834955.1 hypothetical protein -
  ACLBKY_RS16045 (ACLBKY_16045) clpP 3097777..3098373 (+) 597 WP_024719872.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  ACLBKY_RS16050 (ACLBKY_16050) - 3098429..3099007 (-) 579 WP_282745805.1 TIGR00730 family Rossman fold protein -
  ACLBKY_RS16055 (ACLBKY_16055) - 3099144..3099485 (+) 342 WP_045034008.1 MazG nucleotide pyrophosphohydrolase domain-containing protein -
  ACLBKY_RS16060 (ACLBKY_16060) - 3099515..3101137 (-) 1623 WP_414834956.1 SulP family inorganic anion transporter -
  ACLBKY_RS16065 (ACLBKY_16065) - 3101175..3101756 (-) 582 WP_025208023.1 beta-class carbonic anhydrase -
  ACLBKY_RS16070 (ACLBKY_16070) - 3102320..3103297 (+) 978 WP_035701636.1 2-hydroxyacid dehydrogenase -

Sequence


Protein


Download         Length: 198 a.a.        Molecular weight: 21832.00 Da        Isoelectric Point: 4.6905

>NTDB_id=1094761 ACLBKY_RS16045 WP_024719872.1 3097777..3098373(+) (clpP) [Bacillus altitudinis strain Ba 5]
MNLIPTVIEQTNRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLEAEDPEKDISIYINSPGGSITAGMAIYDT
MQFIKPKVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIEIAAKRILSLRDKLNQVLAERTGQ
PIEVIERDTDRDNFKTAEEALQYGLIDKVLTRNSEEQK

Nucleotide


Download         Length: 597 bp        

>NTDB_id=1094761 ACLBKY_RS16045 WP_024719872.1 3097777..3098373(+) (clpP) [Bacillus altitudinis strain Ba 5]
ATGAATTTAATACCTACAGTCATTGAGCAAACAAATCGTGGGGAAAGAGCTTACGACATTTATTCTCGTCTTTTAAAAGA
CCGTATTATCATGCTTGGTTCTGCGATCGATGACAATGTTGCCAACTCCATCGTATCACAGCTTCTTTTCTTAGAAGCCG
AGGATCCAGAAAAAGATATCTCTATCTACATTAACAGCCCTGGCGGTTCGATCACAGCTGGTATGGCCATTTATGATACG
ATGCAATTTATTAAACCAAAGGTATCAACTATTTGTATTGGTATGGCTGCATCTATGGGTGCGTTCCTGCTTGCTGCTGG
TGAAAAAGGTAAGCGTTATGCCCTTCCAAATAGTGAAGTGATGATTCACCAACCACTAGGTGGTGCGCAAGGTCAAGCAA
CAGAAATTGAAATTGCGGCAAAACGAATCCTTTCTTTACGCGATAAACTGAACCAAGTACTTGCTGAACGTACTGGTCAG
CCAATTGAAGTCATTGAGCGCGATACAGATCGTGACAACTTCAAAACAGCGGAAGAAGCACTTCAATACGGACTCATTGA
CAAAGTCTTGACCCGTAATTCAGAAGAACAAAAATAA

Domains


Predicted by InterproScan.

(13-192)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A2G8ISB7

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

92.929

100

0.929

  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

67.539

96.465

0.652

  clpP Streptococcus thermophilus LMG 18311

58.549

97.475

0.571

  clpP Streptococcus thermophilus LMD-9

58.549

97.475

0.571

  clpP Lactococcus lactis subsp. cremoris KW2

56.701

97.98

0.556

  clpP Streptococcus pneumoniae Rx1

56.186

97.98

0.551

  clpP Streptococcus pneumoniae D39

56.186

97.98

0.551

  clpP Streptococcus pneumoniae R6

56.186

97.98

0.551

  clpP Streptococcus pneumoniae TIGR4

56.186

97.98

0.551

  clpP Streptococcus pyogenes JRS4

55.44

97.475

0.54

  clpP Streptococcus pyogenes MGAS315

55.44

97.475

0.54

  clpP Streptococcus mutans UA159

54.639

97.98

0.535

  clpP Lactococcus lactis subsp. lactis strain DGCC12653

54.639

97.98

0.535


Multiple sequence alignment