Detailed information NTG1092874

Bioinformatically predicted

Overview

• Name: comFC
• Type: Machinery gene
• Locus tag: ACK25W_RS15915
• Genome accession: NZ_CP179722
• Coordinates: 3103847..3104533 (-)
• Length: 228 a.a.
• NCBI ID: WP_189288297.1
• Uniprot ID: -
• Organism: Bacillus pumilus strain FJAT-56819
• Function: ssDNA transport into the cell (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3098847..3109533

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACK25W_RS15880 (ACK25W_15880)	fliW	3098980..3099414 (-)	435	WP_034660142.1	flagellar assembly protein FliW	-
ACK25W_RS15885 (ACK25W_15885)	-	3099443..3100021 (-)	579	WP_034660143.1	DUF6470 family protein	-
ACK25W_RS15890 (ACK25W_15890)	flgL	3100070..3100981 (-)	912	WP_066031682.1	flagellar hook-associated protein FlgL	-
ACK25W_RS15895 (ACK25W_15895)	flgK	3100991..3102511 (-)	1521	WP_106036479.1	flagellar hook-associated protein FlgK	-
ACK25W_RS15900 (ACK25W_15900)	-	3102527..3103009 (-)	483	WP_414051668.1	flagellar protein FlgN	-
ACK25W_RS15905 (ACK25W_15905)	flgM	3103028..3103291 (-)	264	WP_003213252.1	flagellar biosynthesis anti-sigma factor FlgM	-
ACK25W_RS15910 (ACK25W_15910)	-	3103371..3103790 (-)	420	WP_060597396.1	TIGR03826 family flagellar region protein	-
ACK25W_RS15915 (ACK25W_15915)	comFC	3103847..3104533 (-)	687	WP_189288297.1	ComF family protein	Machinery gene
ACK25W_RS15920 (ACK25W_15920)	-	3104530..3104823 (-)	294	WP_060597398.1	late competence development ComFB family protein	-
ACK25W_RS15925 (ACK25W_15925)	comFA	3104890..3106269 (-)	1380	WP_142393300.1	DEAD/DEAH box helicase	Machinery gene
ACK25W_RS15930 (ACK25W_15930)	-	3106390..3107232 (-)	843	WP_034660152.1	DegV family protein	-
ACK25W_RS15935 (ACK25W_15935)	degU	3107450..3108139 (-)	690	WP_008348273.1	two-component system response regulator DegU	Regulator
ACK25W_RS15940 (ACK25W_15940)	degS	3108204..3109379 (-)	1176	WP_003213166.1	sensor histidine kinase	Regulator

Sequence

Protein

• Length: 228 a.a.
• Molecular weight: 26048.47 Da
• Isoelectric Point: 9.9327

>NTDB_id=1092874 ACK25W_RS15915 WP_189288297.1 3103847..3104533(-) (comFC) [Bacillus pumilus strain FJAT-56819]
MICLICEGHFVAAFTWKSLLLLNDDHLCIACKHHLEKIQRPICPACGRAQSNDQLCQDCSRWKERPDSTTVLVKNRSVYA
YNDLMKDVLSRFKFRGDTALAELFKQDVQAVFKRSFSIKEPVLIPIPLSKERLKERGFNQSVILASLIGQPILQPLVKIH
QSKQSKKKKNERLDQKRMFQIKQTDAIVQRDVILIDDIYTTGATIYDAARILKEAGAKSVSSFTLIRS

Nucleotide

• Length: 687 bp

>NTDB_id=1092874 ACK25W_RS15915 WP_189288297.1 3103847..3104533(-) (comFC) [Bacillus pumilus strain FJAT-56819]
TTGATCTGCCTAATTTGTGAGGGGCATTTTGTCGCTGCTTTTACATGGAAATCATTACTTCTATTAAATGATGATCATCT
ATGTATAGCATGTAAGCATCACCTAGAAAAAATTCAACGCCCGATTTGTCCAGCTTGTGGGAGAGCACAGTCGAATGATC
AATTATGTCAAGACTGTTCCAGGTGGAAAGAACGCCCTGATTCTACTACAGTACTTGTGAAAAATAGGTCTGTTTATGCT
TACAACGATTTGATGAAAGATGTCCTTTCCCGCTTTAAATTTCGAGGTGATACAGCTTTAGCTGAGCTTTTTAAACAAGA
TGTCCAAGCAGTATTTAAGCGCTCCTTTTCAATTAAAGAACCTGTGCTGATCCCGATTCCTTTAAGTAAAGAAAGGCTAA
AGGAAAGAGGGTTTAATCAGTCAGTCATACTTGCTTCCTTGATTGGTCAGCCGATCCTGCAGCCGCTTGTGAAAATACAT
CAAAGCAAGCAGTCTAAGAAAAAGAAAAATGAACGTTTAGATCAAAAAAGAATGTTTCAAATCAAGCAGACAGATGCGAT
CGTTCAAAGGGATGTTATCTTAATTGACGACATCTATACAACGGGGGCCACCATTTATGATGCGGCAAGAATTTTAAAAG
AAGCAGGTGCCAAAAGTGTTTCCTCTTTTACGTTGATCCGTAGTTAA

Domains

Predicted by InterproScan.

• Double zinc ribbon domain (DZR_2) (3-59)

• Phosphoribosyl transferase domain (Pribosyltran) (156-226)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comFC	Bacillus subtilis subsp. subtilis str. 168	50.435	100	0.509
comFC/cflB	Streptococcus mitis NCTC 12261	39.301	100	0.395
comFC/cflB	Streptococcus mitis SK321	39.301	100	0.395
comFC/cflB	Streptococcus pneumoniae Rx1	39.301	100	0.395
comFC/cflB	Streptococcus pneumoniae D39	39.301	100	0.395
comFC/cflB	Streptococcus pneumoniae R6	39.301	100	0.395
comFC/cflB	Streptococcus pneumoniae TIGR4	39.301	100	0.395