Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   ACK25W_RS15935 Genome accession   NZ_CP179722
Coordinates   3107450..3108139 (-) Length   229 a.a.
NCBI ID   WP_008348273.1    Uniprot ID   A0A5K1NCW2
Organism   Bacillus pumilus strain FJAT-56819     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3102450..3113139
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACK25W_RS15900 (ACK25W_15900) - 3102527..3103009 (-) 483 WP_414051668.1 flagellar protein FlgN -
  ACK25W_RS15905 (ACK25W_15905) flgM 3103028..3103291 (-) 264 WP_003213252.1 flagellar biosynthesis anti-sigma factor FlgM -
  ACK25W_RS15910 (ACK25W_15910) - 3103371..3103790 (-) 420 WP_060597396.1 TIGR03826 family flagellar region protein -
  ACK25W_RS15915 (ACK25W_15915) comFC 3103847..3104533 (-) 687 WP_189288297.1 ComF family protein Machinery gene
  ACK25W_RS15920 (ACK25W_15920) - 3104530..3104823 (-) 294 WP_060597398.1 late competence development ComFB family protein -
  ACK25W_RS15925 (ACK25W_15925) comFA 3104890..3106269 (-) 1380 WP_142393300.1 DEAD/DEAH box helicase Machinery gene
  ACK25W_RS15930 (ACK25W_15930) - 3106390..3107232 (-) 843 WP_034660152.1 DegV family protein -
  ACK25W_RS15935 (ACK25W_15935) degU 3107450..3108139 (-) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  ACK25W_RS15940 (ACK25W_15940) degS 3108204..3109379 (-) 1176 WP_003213166.1 sensor histidine kinase Regulator
  ACK25W_RS15945 (ACK25W_15945) - 3109601..3110269 (+) 669 WP_012011434.1 YigZ family protein -
  ACK25W_RS15950 (ACK25W_15950) - 3110254..3111345 (+) 1092 WP_106048170.1 LCP family protein -
  ACK25W_RS15955 (ACK25W_15955) - 3111382..3112449 (-) 1068 WP_034660156.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25852.54 Da        Isoelectric Point: 5.9436

>NTDB_id=1092876 ACK25W_RS15935 WP_008348273.1 3107450..3108139(-) (degU) [Bacillus pumilus strain FJAT-56819]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVADGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=1092876 ACK25W_RS15935 WP_008348273.1 3107450..3108139(-) (degU) [Bacillus pumilus strain FJAT-56819]
GTGACTAAAGTAAATATTGTAATTATTGATGATCACCAATTATTCCGTGAAGGTGTCAAACGGATTTTAGATTTTGAACC
TACTTTTGAAGTAGTTGCAGAAGGAGACGACGGTGACGAAGCTGCACGTATCGTAGAACACTATCATCCGGATGTTGTCA
TTATGGACATTAATATGCCGAATGTAAATGGTGTAGAGGCTACAAAGCAGCTAGTTGAGCTTTATCCCGAATCAAAAGTC
ATTATTCTATCTATTCATGACGATGAAAACTATGTGACACATGCATTGAAAACAGGGGCAAGAGGCTACCTGTTAAAAGA
AATGGATGCAGACACGCTCATTGAAGCAGTGAAAGTCGTAGCTGACGGAGGATCTTATTTACATCCGAAAGTTACTCATA
ACTTAGTAAATGAATTCCGACGCCTAGCGACTAGTGGCGTTTCAGCACATCCGCAGCACGAGGTATATCCTGAAATTCGC
AGACCACTTCATATCTTAACGAGACGTGAGTGCGAAGTTCTTCAAATGTTAGCTGACGGAAAGAGCAATAGAGGAATTGG
TGAGTCGCTCTTTATTAGTGAGAAAACAGTCAAAAACCACGTGAGTAACATTTTACAAAAAATGAATGTAAACGACCGTA
CACAAGCTGTTGTTGTAGCAATTAAAAACGGCTGGGTAGAAATGAGATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5K1NCW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

99.563

100

0.996

Multiple sequence alignment