Detailed information NTG1092877

Bioinformatically predicted

Overview

• Name: degS
• Type: Regulator
• Locus tag: ACK25W_RS15940
• Genome accession: NZ_CP179722
• Coordinates: 3108204..3109379 (-)
• Length: 391 a.a.
• NCBI ID: WP_003213166.1
• Uniprot ID: -
• Organism: Bacillus pumilus strain FJAT-56819
• Function: phosphorylation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 3103204..3114379

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACK25W_RS15910 (ACK25W_15910)	-	3103371..3103790 (-)	420	WP_060597396.1	TIGR03826 family flagellar region protein	-
ACK25W_RS15915 (ACK25W_15915)	comFC	3103847..3104533 (-)	687	WP_189288297.1	ComF family protein	Machinery gene
ACK25W_RS15920 (ACK25W_15920)	-	3104530..3104823 (-)	294	WP_060597398.1	late competence development ComFB family protein	-
ACK25W_RS15925 (ACK25W_15925)	comFA	3104890..3106269 (-)	1380	WP_142393300.1	DEAD/DEAH box helicase	Machinery gene
ACK25W_RS15930 (ACK25W_15930)	-	3106390..3107232 (-)	843	WP_034660152.1	DegV family protein	-
ACK25W_RS15935 (ACK25W_15935)	degU	3107450..3108139 (-)	690	WP_008348273.1	two-component system response regulator DegU	Regulator
ACK25W_RS15940 (ACK25W_15940)	degS	3108204..3109379 (-)	1176	WP_003213166.1	sensor histidine kinase	Regulator
ACK25W_RS15945 (ACK25W_15945)	-	3109601..3110269 (+)	669	WP_012011434.1	YigZ family protein	-
ACK25W_RS15950 (ACK25W_15950)	-	3110254..3111345 (+)	1092	WP_106048170.1	LCP family protein	-
ACK25W_RS15955 (ACK25W_15955)	-	3111382..3112449 (-)	1068	WP_034660156.1	glycosyltransferase family 4 protein	-
ACK25W_RS15960 (ACK25W_15960)	tuaH	3112584..3113780 (-)	1197	WP_066031804.1	teichuronic acid biosynthesis protein TuaH	-

Sequence

Protein

• Length: 391 a.a.
• Molecular weight: 45523.25 Da
• Isoelectric Point: 5.8757

>NTDB_id=1092877 ACK25W_RS15940 WP_003213166.1 3108204..3109379(-) (degS) [Bacillus pumilus strain FJAT-56819]
MTTPKMDPKLLDSIIMKMLSTVDGSKDEVFRIGEQSRQQYESLVEELKQIKQQVNEVIDFGDKLEVHTRHARNRLSEVSR
NFNKFSEEEIREAYEKAHNLQVELTMIQQREKQLRERRDDLERRLLSLQDVIERSETLVSQITVVLNYLNQDLRQVGVLL
EDAQAKQDFGLRIIEAQEEERKRVSREIHDGPAQMLANVMMRSELIERIFRDRGTEEGFKEIRSLRQNVRNALYEVRRII
YDLRPMALDDLGLIPTLRKYLNTIEEYDGKTKITFQCLGDTESERIASQFEVALFRLAQEAVTNSLKHSEAEEISVKVEV
TKDFVTLIIKDDGKGFDMKDVKTNKNKSFGLLGMKERVDLLEGKMTIDSKIGLGTFIMIRVPLTLQNKIVK

Nucleotide

• Length: 1176 bp

>NTDB_id=1092877 ACK25W_RS15940 WP_003213166.1 3108204..3109379(-) (degS) [Bacillus pumilus strain FJAT-56819]
ATGACAACACCTAAAATGGATCCGAAATTATTGGATTCAATCATCATGAAAATGCTAAGTACAGTTGATGGCAGCAAGGA
CGAAGTATTTAGGATAGGCGAACAGTCCCGTCAACAATATGAAAGCCTAGTAGAAGAGCTGAAGCAAATCAAGCAGCAAG
TAAACGAAGTAATTGATTTTGGGGATAAACTCGAAGTCCATACGAGACATGCTAGAAATCGCTTATCTGAGGTCAGCAGA
AACTTCAACAAATTTAGCGAAGAAGAAATACGGGAGGCCTACGAAAAAGCACATAATCTACAAGTGGAACTCACCATGAT
CCAGCAGCGCGAAAAGCAGCTGAGAGAAAGAAGAGACGATCTGGAAAGACGATTGTTAAGCCTGCAAGACGTCATTGAAC
GCTCTGAAACGCTTGTGAGTCAGATCACAGTTGTTCTCAACTATCTCAATCAGGACTTACGCCAAGTTGGCGTGTTACTT
GAAGATGCTCAGGCAAAACAAGATTTTGGACTAAGAATTATTGAAGCCCAAGAAGAAGAACGCAAAAGGGTGTCCCGGGA
AATTCATGACGGTCCGGCCCAGATGCTGGCAAACGTGATGATGCGTTCCGAATTAATTGAACGGATTTTCAGAGACCGTG
GGACAGAAGAAGGCTTTAAAGAAATTAGAAGTCTCAGACAGAATGTGCGAAATGCTCTGTACGAAGTGAGAAGAATCATT
TATGATTTAAGACCAATGGCTTTAGATGATTTGGGTCTCATTCCGACGCTAAGAAAATATTTAAACACAATCGAAGAGTA
TGATGGAAAAACCAAGATTACGTTCCAATGCCTAGGGGATACAGAAAGCGAAAGAATTGCTTCTCAATTTGAAGTGGCAC
TGTTTAGACTAGCCCAAGAAGCTGTCACAAATTCACTAAAGCATTCCGAAGCTGAAGAAATCTCTGTAAAAGTAGAAGTG
ACGAAAGACTTTGTCACGTTAATTATCAAAGACGATGGAAAAGGCTTTGATATGAAAGATGTGAAAACAAACAAAAACAA
ATCCTTCGGTTTACTTGGCATGAAAGAACGCGTAGACTTACTGGAAGGTAAAATGACCATAGACTCAAAAATAGGTCTAG
GGACATTCATCATGATTCGCGTGCCATTAACATTGCAAAATAAAATTGTAAAATAG

Domains

Predicted by InterproScan.

• Sensor protein DegS (DegS) (12-170)

• Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c) (291-384)

• Histidine kinase (HisKA_3) (180-248)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
degS	Bacillus subtilis subsp. subtilis str. 168	85.455	98.465	0.841