Detailed information
Bioinformatically predicted
Overview
| Name | pilC | Type | Machinery gene |
| Locus tag | ACLKL2_RS07925 | Genome accession | NZ_CP178827 |
| Coordinates | 1644156..1645382 (-) | Length | 408 a.a. |
| NCBI ID | WP_413693999.1 | Uniprot ID | - |
| Organism | Pseudoalteromonas sp. KJ10-2 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1639156..1650382
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACLKL2_RS07905 (ACLKL2_07905) | - | 1639170..1640444 (-) | 1275 | WP_113820601.1 | TRAP transporter large permease | - |
| ACLKL2_RS07910 (ACLKL2_07910) | - | 1640504..1641004 (-) | 501 | WP_413693997.1 | TRAP transporter small permease | - |
| ACLKL2_RS07915 (ACLKL2_07915) | - | 1641188..1642168 (-) | 981 | WP_113820599.1 | TRAP transporter substrate-binding protein | - |
| ACLKL2_RS07920 (ACLKL2_07920) | - | 1642380..1643063 (+) | 684 | WP_413693998.1 | LysR family transcriptional regulator | - |
| ACLKL2_RS07925 (ACLKL2_07925) | pilC | 1644156..1645382 (-) | 1227 | WP_413693999.1 | type II secretion system F family protein | Machinery gene |
| ACLKL2_RS07930 (ACLKL2_07930) | pilB | 1645534..1647218 (-) | 1685 | Protein_1558 | type IV-A pilus assembly ATPase PilB | - |
| ACLKL2_RS07935 (ACLKL2_07935) | - | 1647225..1647650 (-) | 426 | WP_413694000.1 | pilin | - |
| ACLKL2_RS07940 (ACLKL2_07940) | nhaD | 1648455..1649897 (-) | 1443 | WP_413694001.1 | sodium:proton antiporter NhaD | - |
Sequence
Protein
Download Length: 408 a.a. Molecular weight: 44382.94 Da Isoelectric Point: 8.6196
>NTDB_id=1091811 ACLKL2_RS07925 WP_413693999.1 1644156..1645382(-) (pilC) [Pseudoalteromonas sp. KJ10-2]
MANNNTIIELNTFSWNGINRKGAKVSGELQGASQNEVKVELRKQGVSVTRIKKKPKSLFSFGDKVQPMDIAIVSRQIATM
LNAGVPLVQSLELIAKSNEKPSLRKLMTSIANEVATGTPMSQTLRSYPRHFDDLYCDLVEAGEQSGALDTIYDRIATYKE
KSEALKSKIKKAMFYPAAVIAVAFVVTLLLLLFVIPQFQDIFSGFGAELPAFTLFVLGISDIVQNYWYLVIGSVFLAIFL
FKRAHRGSEKVRNNTDKFVLKIPVISPILDKAAVARFARTLSTTSAAGIPLVDALLSAAGASGNYVYRTAVLAMRTEVMA
GMQINVAMKTTDAFPDMVSQMVMIGEESGDIDGMLAKVADIYEQQVDDAVDSLTSLLEPMIMVVLGVVVGGLIVAMYLPI
FQLGSVIG
MANNNTIIELNTFSWNGINRKGAKVSGELQGASQNEVKVELRKQGVSVTRIKKKPKSLFSFGDKVQPMDIAIVSRQIATM
LNAGVPLVQSLELIAKSNEKPSLRKLMTSIANEVATGTPMSQTLRSYPRHFDDLYCDLVEAGEQSGALDTIYDRIATYKE
KSEALKSKIKKAMFYPAAVIAVAFVVTLLLLLFVIPQFQDIFSGFGAELPAFTLFVLGISDIVQNYWYLVIGSVFLAIFL
FKRAHRGSEKVRNNTDKFVLKIPVISPILDKAAVARFARTLSTTSAAGIPLVDALLSAAGASGNYVYRTAVLAMRTEVMA
GMQINVAMKTTDAFPDMVSQMVMIGEESGDIDGMLAKVADIYEQQVDDAVDSLTSLLEPMIMVVLGVVVGGLIVAMYLPI
FQLGSVIG
Nucleotide
Download Length: 1227 bp
>NTDB_id=1091811 ACLKL2_RS07925 WP_413693999.1 1644156..1645382(-) (pilC) [Pseudoalteromonas sp. KJ10-2]
ATGGCGAATAATAACACTATCATTGAGTTAAATACCTTTAGTTGGAATGGTATAAACCGTAAAGGGGCTAAGGTTTCAGG
TGAGTTGCAAGGCGCTAGCCAAAATGAAGTCAAAGTAGAATTACGCAAACAGGGTGTGAGTGTTACTCGCATTAAAAAGA
AGCCTAAATCACTGTTTTCCTTTGGTGATAAAGTTCAGCCAATGGATATCGCCATTGTGTCACGACAAATTGCAACTATG
CTTAATGCCGGTGTGCCCTTGGTACAAAGCTTAGAATTAATCGCTAAAAGTAATGAAAAGCCTTCTCTACGTAAGTTGAT
GACCTCGATAGCCAATGAAGTGGCAACTGGTACGCCAATGTCGCAAACCTTACGCTCTTACCCAAGACACTTTGATGATC
TGTACTGTGATCTAGTAGAAGCGGGTGAGCAGTCTGGTGCTTTAGATACCATTTACGATCGTATCGCTACCTATAAAGAA
AAATCAGAAGCGTTAAAATCTAAAATTAAAAAAGCGATGTTTTATCCTGCAGCAGTTATTGCAGTGGCTTTTGTGGTTAC
TTTATTATTGCTGTTATTTGTTATCCCGCAGTTCCAAGATATTTTCTCTGGTTTTGGTGCTGAATTACCTGCGTTTACTT
TGTTTGTATTAGGAATTTCAGATATTGTTCAAAATTATTGGTATCTAGTTATCGGTAGTGTGTTTTTAGCTATTTTCCTG
TTTAAAAGAGCGCATCGAGGCAGTGAGAAAGTCCGTAATAATACCGATAAATTTGTTTTAAAGATTCCTGTTATTAGCCC
TATTTTAGATAAAGCTGCCGTTGCCCGTTTTGCGCGTACTTTATCAACTACCTCAGCTGCGGGTATCCCTTTAGTTGATG
CATTACTGTCAGCTGCTGGTGCTTCTGGTAACTATGTTTACAGAACCGCAGTGCTTGCAATGCGTACCGAAGTAATGGCC
GGTATGCAAATTAATGTGGCCATGAAAACCACCGATGCTTTTCCGGACATGGTGTCACAAATGGTCATGATCGGTGAAGA
GTCGGGGGATATTGATGGCATGTTAGCGAAGGTCGCGGATATCTATGAACAACAAGTTGATGATGCGGTAGATAGTTTAA
CCAGTTTATTAGAGCCGATGATCATGGTGGTATTAGGTGTTGTTGTCGGTGGTTTAATTGTTGCCATGTATTTACCTATC
TTCCAACTAGGTAGTGTTATTGGTTAA
ATGGCGAATAATAACACTATCATTGAGTTAAATACCTTTAGTTGGAATGGTATAAACCGTAAAGGGGCTAAGGTTTCAGG
TGAGTTGCAAGGCGCTAGCCAAAATGAAGTCAAAGTAGAATTACGCAAACAGGGTGTGAGTGTTACTCGCATTAAAAAGA
AGCCTAAATCACTGTTTTCCTTTGGTGATAAAGTTCAGCCAATGGATATCGCCATTGTGTCACGACAAATTGCAACTATG
CTTAATGCCGGTGTGCCCTTGGTACAAAGCTTAGAATTAATCGCTAAAAGTAATGAAAAGCCTTCTCTACGTAAGTTGAT
GACCTCGATAGCCAATGAAGTGGCAACTGGTACGCCAATGTCGCAAACCTTACGCTCTTACCCAAGACACTTTGATGATC
TGTACTGTGATCTAGTAGAAGCGGGTGAGCAGTCTGGTGCTTTAGATACCATTTACGATCGTATCGCTACCTATAAAGAA
AAATCAGAAGCGTTAAAATCTAAAATTAAAAAAGCGATGTTTTATCCTGCAGCAGTTATTGCAGTGGCTTTTGTGGTTAC
TTTATTATTGCTGTTATTTGTTATCCCGCAGTTCCAAGATATTTTCTCTGGTTTTGGTGCTGAATTACCTGCGTTTACTT
TGTTTGTATTAGGAATTTCAGATATTGTTCAAAATTATTGGTATCTAGTTATCGGTAGTGTGTTTTTAGCTATTTTCCTG
TTTAAAAGAGCGCATCGAGGCAGTGAGAAAGTCCGTAATAATACCGATAAATTTGTTTTAAAGATTCCTGTTATTAGCCC
TATTTTAGATAAAGCTGCCGTTGCCCGTTTTGCGCGTACTTTATCAACTACCTCAGCTGCGGGTATCCCTTTAGTTGATG
CATTACTGTCAGCTGCTGGTGCTTCTGGTAACTATGTTTACAGAACCGCAGTGCTTGCAATGCGTACCGAAGTAATGGCC
GGTATGCAAATTAATGTGGCCATGAAAACCACCGATGCTTTTCCGGACATGGTGTCACAAATGGTCATGATCGGTGAAGA
GTCGGGGGATATTGATGGCATGTTAGCGAAGGTCGCGGATATCTATGAACAACAAGTTGATGATGCGGTAGATAGTTTAA
CCAGTTTATTAGAGCCGATGATCATGGTGGTATTAGGTGTTGTTGTCGGTGGTTTAATTGTTGCCATGTATTTACCTATC
TTCCAACTAGGTAGTGTTATTGGTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilC | Pseudomonas stutzeri DSM 10701 |
57.5 |
98.039 |
0.564 |
| pilC | Acinetobacter baumannii D1279779 |
52.513 |
97.549 |
0.512 |
| pilC | Acinetobacter baylyi ADP1 |
51.385 |
97.304 |
0.5 |
| pilC | Legionella pneumophila strain ERS1305867 |
49.875 |
97.794 |
0.488 |
| pilC | Vibrio cholerae strain A1552 |
47.015 |
98.529 |
0.463 |
| pilC | Vibrio campbellii strain DS40M4 |
45.274 |
98.529 |
0.446 |
| pilG | Neisseria meningitidis 44/76-A |
40.155 |
94.608 |
0.38 |
| pilG | Neisseria gonorrhoeae MS11 |
39.896 |
94.608 |
0.377 |