Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX/sigX/comX2/sigX2   Type   Regulator
Locus tag   SP5448_RS07920 Genome accession   NZ_CP008776
Coordinates   1566606..1567157 (-) Length   183 a.a.
NCBI ID   WP_010921894.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain 5448     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1561606..1572157
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SP5448_RS07885 (SP5448_08185) - 1562031..1562663 (-) 633 WP_010921896.1 nicotinate-nucleotide adenylyltransferase -
  SP5448_RS07890 (SP5448_08190) yhbY 1562732..1563040 (-) 309 WP_002991094.1 ribosome assembly RNA-binding protein YhbY -
  SP5448_RS07895 (SP5448_08195) yqeH 1563065..1564183 (-) 1119 WP_002991828.1 ribosome biogenesis GTPase YqeH -
  SP5448_RS07900 (SP5448_08200) - 1564183..1564710 (-) 528 WP_002991099.1 YqeG family HAD IIIA-type phosphatase -
  SP5448_RS09485 - 1564873..1565995 (-) 1123 Protein_1529 ISAs1-like element IS1548 family transposase -
  SP5448_RS07920 (SP5448_08220) comX/sigX/comX2/sigX2 1566606..1567157 (-) 552 WP_010921894.1 sigma-70 family RNA polymerase sigma factor Regulator

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 22281.08 Da        Isoelectric Point: 10.0375

>NTDB_id=108634 SP5448_RS07920 WP_010921894.1 1566606..1567157(-) (comX/sigX/comX2/sigX2) [Streptococcus pyogenes strain 5448]
MSCCFFVVLFILGIVKKKRRLKMSIETRAAFEKVKPIILKLKRHYYIQLWDRDDWLQEGHIILLQLLERYPELIEEEERL
YRYFKTKFSSYLKDLLRRQESQKRQFHKLAYEEIGEVAHAIPSRGLWLDDYVAYQEVIASLENQLNSQERMQFQALIRGE
RFKGRRALLRKISPYFKEFAQQL

Nucleotide


Download         Length: 552 bp        

>NTDB_id=108634 SP5448_RS07920 WP_010921894.1 1566606..1567157(-) (comX/sigX/comX2/sigX2) [Streptococcus pyogenes strain 5448]
ATGTCCTGTTGTTTTTTTGTGGTTCTCTTTATACTAGGGATAGTTAAAAAGAAAAGGAGACTCAAAATGTCGATAGAGAC
AAGAGCAGCGTTTGAAAAAGTTAAGCCCATTATTTTGAAATTAAAGCGACACTATTATATTCAATTGTGGGATAGAGATG
ACTGGTTACAAGAAGGACATATTATCTTATTACAGTTACTAGAAAGGTACCCAGAGTTAATTGAGGAAGAAGAGCGTTTA
TATCGCTATTTTAAAACAAAATTTTCATCTTATTTGAAAGATTTATTACGCCGTCAAGAAAGTCAAAAGCGTCAGTTCCA
TAAGTTAGCATATGAAGAGATAGGGGAGGTTGCACATGCCATTCCATCGAGAGGGTTATGGCTAGACGACTATGTGGCTT
ATCAAGAGGTAATAGCTAGCTTAGAGAACCAATTAAATTCGCAAGAGCGTATGCAGTTTCAAGCACTTATCAGGGGCGAA
CGTTTCAAGGGAAGACGTGCTCTACTTAGGAAGATCAGTCCCTATTTTAAGGAATTTGCACAGCAGTTGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.