Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   ACKXGF_RS14245 Genome accession   NZ_CP177234
Coordinates   2759828..2760319 (-) Length   163 a.a.
NCBI ID   WP_411954346.1    Uniprot ID   -
Organism   Alkalibacillus sp. S2W     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2754828..2765319
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKXGF_RS14225 (ACKXGF_14225) rplI 2755959..2756405 (-) 447 WP_167261498.1 50S ribosomal protein L9 -
  ACKXGF_RS14230 (ACKXGF_14230) - 2756402..2758375 (-) 1974 WP_411954344.1 DHH family phosphoesterase -
  ACKXGF_RS14235 (ACKXGF_14235) - 2758408..2759346 (-) 939 WP_411954345.1 YybS family protein -
  ACKXGF_RS14240 (ACKXGF_14240) rpsR 2759572..2759799 (-) 228 WP_167261504.1 30S ribosomal protein S18 -
  ACKXGF_RS14245 (ACKXGF_14245) ssbA 2759828..2760319 (-) 492 WP_411954346.1 single-stranded DNA-binding protein Machinery gene
  ACKXGF_RS14250 (ACKXGF_14250) rpsF 2760332..2760619 (-) 288 WP_411954347.1 30S ribosomal protein S6 -
  ACKXGF_RS14255 (ACKXGF_14255) ychF 2760746..2761846 (-) 1101 WP_411954348.1 redox-regulated ATPase YchF -
  ACKXGF_RS14260 (ACKXGF_14260) - 2762036..2762236 (-) 201 WP_306974025.1 DUF951 domain-containing protein -
  ACKXGF_RS14265 (ACKXGF_14265) - 2762274..2763299 (-) 1026 WP_411954349.1 hypothetical protein -
  ACKXGF_RS14270 (ACKXGF_14270) yyaC 2763382..2763975 (+) 594 WP_411954350.1 spore protease YyaC -
  ACKXGF_RS14275 (ACKXGF_14275) - 2763993..2764712 (-) 720 WP_411954351.1 DUF554 domain-containing protein -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 18121.85 Da        Isoelectric Point: 4.6304

>NTDB_id=1086321 ACKXGF_RS14245 WP_411954346.1 2759828..2760319(-) (ssbA) [Alkalibacillus sp. S2W]
MLNRTVLVGRLTKDPELRYTANGVAVANFTIAVNRPFSNQQGEREADFINCVIWRKQAENLASYMGKGSMVGVDGRIQTR
SFDNQEGKRIFMTEVVAESVQFLESRNSNQGKQGGQPGNTSNQAQQSNQGGYQPQQQQSQSKEQNPFEDSGEPVDLSDDD
LPF

Nucleotide


Download         Length: 492 bp        

>NTDB_id=1086321 ACKXGF_RS14245 WP_411954346.1 2759828..2760319(-) (ssbA) [Alkalibacillus sp. S2W]
GTGTTAAATCGTACAGTATTAGTAGGTAGGTTAACAAAAGACCCTGAACTACGTTATACAGCGAATGGAGTTGCTGTTGC
TAATTTCACAATAGCTGTAAACCGCCCTTTCTCCAACCAACAAGGTGAACGAGAAGCGGATTTCATTAATTGTGTTATTT
GGCGCAAACAAGCGGAAAACCTAGCTAGCTACATGGGTAAAGGTAGTATGGTTGGGGTTGATGGACGTATTCAAACGCGC
AGCTTTGACAATCAAGAAGGTAAACGAATCTTCATGACAGAAGTTGTAGCAGAAAGTGTTCAATTCCTTGAGTCAAGAAA
CAGCAACCAGGGTAAACAAGGTGGACAACCTGGAAACACATCAAACCAAGCGCAACAATCAAATCAGGGCGGTTATCAAC
CGCAACAACAACAATCACAATCTAAAGAGCAGAATCCATTTGAAGATAGTGGTGAACCAGTCGATTTATCAGACGATGAC
TTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

58.721

100

0.62
  ssb Latilactobacillus sakei subsp. sakei 23K

53.529

100

0.558
  ssbB Bacillus subtilis subsp. subtilis str. 168

59.434

65.031

0.387
  ssb Glaesserella parasuis strain SC1401

34.27

100

0.374
  ssb Neisseria meningitidis MC58

34.483

100

0.368
  ssb Neisseria gonorrhoeae MS11

34.483

100

0.368
  ssb Vibrio cholerae strain A1552

33.708

100

0.368

Multiple sequence alignment