Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   ACJWMD_RS02770 Genome accession   NZ_CP177182
Coordinates   538467..540437 (+) Length   656 a.a.
NCBI ID   WP_002886844.1    Uniprot ID   -
Organism   Streptococcus salivarius strain MRD6060     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 533467..545437
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJWMD_RS02755 - 534185..535081 (+) 897 WP_002884380.1 RluA family pseudouridine synthase -
  ACJWMD_RS02760 pta 535095..536078 (+) 984 WP_002886841.1 phosphate acetyltransferase -
  ACJWMD_RS02765 amiA 536315..538285 (+) 1971 WP_002886843.1 peptide ABC transporter substrate-binding protein Regulator
  ACJWMD_RS02770 amiA 538467..540437 (+) 1971 WP_002886844.1 peptide ABC transporter substrate-binding protein Regulator
  ACJWMD_RS02775 amiC 540498..541991 (+) 1494 WP_002886845.1 ABC transporter permease Regulator
  ACJWMD_RS02780 amiD 541991..542917 (+) 927 WP_002886846.1 oligopeptide ABC transporter permease OppC Regulator
  ACJWMD_RS02785 amiE 542927..544012 (+) 1086 WP_002884363.1 ABC transporter ATP-binding protein Regulator
  ACJWMD_RS02790 amiF 544005..544934 (+) 930 WP_002886847.1 ATP-binding cassette domain-containing protein Regulator

Sequence

Protein


Download         Length: 656 a.a.        Molecular weight: 72928.32 Da        Isoelectric Point: 5.2854

>NTDB_id=1086001 ACJWMD_RS02770 WP_002886844.1 538467..540437(+) (amiA) [Streptococcus salivarius strain MRD6060]
MKKSKWLALAGVSLLSVGVLVACSSKSNTSSNTYNYVYTADPETLDYLISNKGSTTDAVTNGVDGLLENDKYGNLVPSIA
KDWTVSADGLTYTYKLRKGVKWYTSDGEEYAEVTAKDFVTGLKHAADKKTESIYLAKDSVVGLADYFNGTDKDFSKVGVK
ALDDYTLQYTLKQPEPYWNSKMTYSLFWPVNEEFLKSKGDSFGKSTDPSSILYNGPYILKSLTAKSSIELAKNENYWDKK
NVHFDGVKLSFYDASDQESLVRNFTDGAYSQARLYPTSSNFDSVEKQYKDNIFYTQPSADVLGAGVNIDRQSYNHTSKKT
DAEKDSTKKALLNKDFRQSVNFAIDRTAYSAQLNGKKGAALAIRNLLVKPDFVYAGDKSFGDLVTEKMASYGDEWSGVNL
KDSQDGIFNADKAKTEFNKAKEALQADGVQFPIHLDLPVDQAAKTTVARAQSLKQSVEKTLGKENVVVDIHQMSQDDLLN
STLYAANAAAEDWDINISVAWAPDYEDPSTFLDIFKTTASENTKTYMGFDDPNNAAAAQVGLKDFDALVDNAAKETSDLN
VRYERYAEAQAWLEDSSLFMPLMVNKGAAPMVARLTPFSGAYSQVGPKGSDRYFKYLEPQKDVVTKKNYDKARESWLKEK
SKSNEKAQKDLEKHVK

Nucleotide


Download         Length: 1971 bp        

>NTDB_id=1086001 ACJWMD_RS02770 WP_002886844.1 538467..540437(+) (amiA) [Streptococcus salivarius strain MRD6060]
ATGAAAAAAAGTAAATGGTTGGCCCTTGCGGGTGTTTCCCTCCTAAGTGTTGGGGTTTTAGTGGCTTGTTCATCAAAATC
AAACACTTCAAGCAATACTTATAACTATGTTTATACTGCTGATCCTGAAACATTGGACTATCTTATTTCCAATAAAGGTT
CAACGACTGATGCTGTGACAAATGGTGTCGATGGCCTTTTGGAAAACGATAAATATGGTAACTTGGTACCTTCTATTGCC
AAGGACTGGACTGTTTCAGCTGATGGTTTGACTTATACTTACAAACTTCGTAAGGGAGTTAAATGGTACACTTCAGATGG
TGAAGAGTATGCAGAAGTAACAGCTAAAGACTTCGTAACAGGTCTTAAGCATGCTGCTGATAAAAAGACAGAGTCAATTT
ACTTGGCAAAAGATTCTGTAGTAGGTCTTGCTGATTATTTCAATGGTACTGATAAAGACTTCTCTAAAGTTGGCGTTAAA
GCTCTTGATGATTACACTCTTCAGTACACACTTAAACAACCAGAACCTTACTGGAATTCTAAGATGACTTATTCTCTCTT
CTGGCCTGTAAATGAAGAGTTTCTTAAGTCAAAAGGGGATAGCTTTGGTAAATCAACAGATCCATCATCTATCCTTTATA
ATGGTCCATATATCCTTAAGTCATTGACAGCTAAATCATCTATCGAGTTGGCTAAAAATGAAAACTATTGGGATAAGAAA
AATGTTCACTTTGACGGCGTTAAACTATCTTTCTACGACGCTTCTGACCAAGAATCGCTTGTCCGTAATTTCACTGACGG
AGCTTATAGTCAAGCACGTCTATATCCAACAAGCTCAAACTTTGATTCAGTAGAAAAACAATATAAAGATAATATCTTCT
ATACACAACCTTCTGCAGATGTTCTTGGTGCTGGTGTTAACATTGACCGTCAGTCTTACAACCATACATCTAAGAAGACA
GATGCTGAGAAGGACTCAACTAAGAAGGCTCTTCTTAACAAGGACTTCCGTCAATCAGTTAACTTCGCTATTGACCGTAC
AGCTTATTCAGCACAACTTAATGGTAAGAAGGGTGCGGCCCTTGCGATTCGTAACCTACTCGTAAAACCTGACTTCGTTT
ATGCTGGTGACAAGTCATTTGGCGATTTGGTAACTGAAAAGATGGCTTCATATGGTGATGAGTGGTCAGGTGTCAACCTT
AAAGACAGTCAAGATGGTATCTTCAACGCTGATAAGGCTAAGACTGAATTTAATAAGGCCAAGGAAGCCCTTCAAGCAGA
TGGTGTTCAATTCCCAATTCACTTGGACCTTCCTGTTGACCAAGCGGCTAAAACAACGGTTGCACGTGCACAATCTTTGA
AACAATCTGTTGAAAAGACACTTGGCAAAGAAAATGTCGTGGTAGATATTCATCAAATGTCTCAAGATGATCTTCTAAAT
AGCACATTGTATGCAGCTAACGCAGCAGCAGAAGACTGGGATATCAATATTTCAGTTGCTTGGGCGCCTGACTACGAAGA
CCCATCAACATTCCTTGATATCTTCAAGACAACAGCTAGTGAGAACACAAAAACTTACATGGGATTTGACGATCCTAATA
ATGCAGCAGCAGCTCAAGTAGGTCTTAAAGACTTTGATGCTTTGGTTGATAATGCAGCTAAAGAAACAAGCGACCTCAAC
GTACGTTATGAACGTTATGCAGAGGCACAAGCCTGGTTGGAAGATAGCTCACTCTTCATGCCACTTATGGTTAACAAGGG
CGCTGCTCCAATGGTAGCTCGTTTGACACCATTCTCAGGTGCTTACTCTCAAGTAGGACCTAAGGGTTCTGACAGATACT
TCAAGTACCTTGAACCTCAAAAAGATGTTGTCACTAAGAAAAACTATGATAAAGCTCGCGAAAGCTGGCTTAAAGAAAAG
TCTAAGTCCAACGAAAAAGCTCAAAAAGACCTTGAGAAACACGTTAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(75-520)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

75.305

100

0.753
  amiA3 Streptococcus thermophilus LMG 18311

75.19

100

0.753
  amiA3 Streptococcus thermophilus LMD-9

75.19

100

0.753

Multiple sequence alignment