Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   ACJWMD_RS02790 Genome accession   NZ_CP177182
Coordinates   544005..544934 (+) Length   309 a.a.
NCBI ID   WP_002886847.1    Uniprot ID   A0AB37CQR1
Organism   Streptococcus salivarius strain MRD6060     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 539005..549934
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJWMD_RS02775 amiC 540498..541991 (+) 1494 WP_002886845.1 ABC transporter permease Regulator
  ACJWMD_RS02780 amiD 541991..542917 (+) 927 WP_002886846.1 oligopeptide ABC transporter permease OppC Regulator
  ACJWMD_RS02785 amiE 542927..544012 (+) 1086 WP_002884363.1 ABC transporter ATP-binding protein Regulator
  ACJWMD_RS02790 amiF 544005..544934 (+) 930 WP_002886847.1 ATP-binding cassette domain-containing protein Regulator
  ACJWMD_RS02795 - 544985..545770 (-) 786 WP_002886848.1 hypothetical protein -
  ACJWMD_RS02800 - 545782..546480 (-) 699 WP_002886849.1 ABC transporter ATP-binding protein -
  ACJWMD_RS02805 - 546485..546862 (-) 378 WP_002886850.1 GntR family transcriptional regulator -
  ACJWMD_RS02810 - 547044..547838 (+) 795 WP_002886851.1 HAD-IIB family hydrolase -
  ACJWMD_RS02815 - 547831..548649 (+) 819 WP_002886852.1 Cof-type HAD-IIB family hydrolase -

Sequence

Protein


Download         Length: 309 a.a.        Molecular weight: 35032.08 Da        Isoelectric Point: 6.5101

>NTDB_id=1086005 ACJWMD_RS02790 WP_002886847.1 544005..544934(+) (amiF) [Streptococcus salivarius strain MRD6060]
MPEKLVEVKDVEISFGEGSKKFVAVHNANFFINKGETFSLVGESGSGKTTIGRAIIGLNDTSNGEIIFDGKKINGHLSHS
EKNDLIRRIQMIFQDPAASLNERATVDYILSEGLYNFHLYKDEEDRKAKIKEIIKEVGLLEEHLTRYPHEFSGGQRQRIG
IARSLVMQPDLVIADEPISALDVSVRAQVLNLLKKFQKELGLTYLFIAHDLSVVRFISDRIAVIYKGTIVEVAETEELYN
NPIHPYTKSLLSAVPIPDPILERKKVLKVYDPNQHDYSVDKPEMVEVRPGHFVWGNKAEIETYRKEQSK

Nucleotide


Download         Length: 930 bp        

>NTDB_id=1086005 ACJWMD_RS02790 WP_002886847.1 544005..544934(+) (amiF) [Streptococcus salivarius strain MRD6060]
ATGCCTGAGAAGTTAGTTGAAGTAAAAGATGTGGAGATTTCCTTCGGTGAAGGAAGCAAGAAATTCGTTGCTGTCCACAA
TGCTAATTTTTTCATCAACAAGGGTGAAACCTTTTCCCTCGTTGGTGAGTCTGGTAGTGGTAAGACCACTATTGGGCGTG
CCATTATTGGTCTGAATGATACAAGTAATGGTGAGATTATTTTTGACGGTAAGAAAATCAATGGGCACTTATCTCACTCT
GAGAAAAACGACCTTATCCGTCGTATTCAGATGATTTTCCAAGACCCTGCGGCTAGTTTGAATGAACGTGCAACAGTTGA
TTATATCTTGTCTGAGGGCTTGTATAACTTCCATCTCTATAAGGATGAGGAAGATCGTAAAGCCAAAATCAAGGAAATCA
TCAAAGAAGTGGGACTTCTTGAGGAGCACTTGACACGTTACCCTCACGAATTTTCTGGGGGACAACGTCAACGTATCGGT
ATTGCGCGTTCCTTGGTTATGCAACCTGACTTGGTCATCGCTGACGAACCAATCTCAGCCCTTGACGTGTCAGTTCGTGC
CCAAGTTTTGAACTTGCTTAAGAAATTCCAAAAAGAGTTGGGATTGACCTACCTCTTTATCGCTCACGACTTGTCAGTGG
TCCGTTTCATTTCTGACCGTATCGCTGTTATTTACAAGGGGACAATCGTGGAAGTTGCTGAGACAGAAGAACTCTACAAC
AATCCTATCCACCCTTACACCAAGTCACTCTTGTCTGCTGTTCCTATTCCAGACCCAATCTTGGAACGTAAGAAAGTCTT
GAAGGTTTATGATCCAAACCAACATGACTATTCTGTTGATAAACCAGAAATGGTTGAAGTACGTCCAGGACACTTCGTTT
GGGGTAACAAGGCCGAAATCGAGACTTATCGTAAAGAACAAAGTAAATAA

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)

ABC transporter (ABC_tran)

(26-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus salivarius strain HSISS4

99.353

100

0.994
  amiF Streptococcus thermophilus LMG 18311

98.706

100

0.987
  amiF Streptococcus thermophilus LMD-9

98.382

100

0.984

Multiple sequence alignment