Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   ACJWMD_RS02780 Genome accession   NZ_CP177182
Coordinates   541991..542917 (+) Length   308 a.a.
NCBI ID   WP_002886846.1    Uniprot ID   A0A0F3HAC7
Organism   Streptococcus salivarius strain MRD6060     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 536991..547917
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJWMD_RS02770 amiA 538467..540437 (+) 1971 WP_002886844.1 peptide ABC transporter substrate-binding protein Regulator
  ACJWMD_RS02775 amiC 540498..541991 (+) 1494 WP_002886845.1 ABC transporter permease Regulator
  ACJWMD_RS02780 amiD 541991..542917 (+) 927 WP_002886846.1 oligopeptide ABC transporter permease OppC Regulator
  ACJWMD_RS02785 amiE 542927..544012 (+) 1086 WP_002884363.1 ABC transporter ATP-binding protein Regulator
  ACJWMD_RS02790 amiF 544005..544934 (+) 930 WP_002886847.1 ATP-binding cassette domain-containing protein Regulator
  ACJWMD_RS02795 - 544985..545770 (-) 786 WP_002886848.1 hypothetical protein -
  ACJWMD_RS02800 - 545782..546480 (-) 699 WP_002886849.1 ABC transporter ATP-binding protein -
  ACJWMD_RS02805 - 546485..546862 (-) 378 WP_002886850.1 GntR family transcriptional regulator -
  ACJWMD_RS02810 - 547044..547838 (+) 795 WP_002886851.1 HAD-IIB family hydrolase -

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34607.77 Da        Isoelectric Point: 9.7054

>NTDB_id=1086003 ACJWMD_RS02780 WP_002886846.1 541991..542917(+) (amiD) [Streptococcus salivarius strain MRD6060]
MASIDKSKFQFVKRDDFASETIDAPAYSYWKSVMRQFFKKKSTVVMLGILIAIVLMSFIYPMFSKFDFNDVSKVNDFSLR
YVHPNAQYWFGTDSNGKSLFDSVWFGARNSILIAVIATFLNVVIGLLVGAVWGISKTFDMIMMEIYNIISNIPALLVVIV
LTYSLGAGFWNMIFAMTVTGWIGIAYTIRIQIMRYRDLEYNLASRTLGTPTAKIVVKNIMPQLVSVIVTMASQLLPGFIS
YEAFLSYFGLGLPVTTPSLGRLISDYAQNVTVNAYLFWIPLTTLILVSLALFIVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=1086003 ACJWMD_RS02780 WP_002886846.1 541991..542917(+) (amiD) [Streptococcus salivarius strain MRD6060]
ATGGCTTCAATTGATAAAAGTAAGTTCCAATTTGTAAAGCGCGATGATTTTGCCTCTGAAACAATTGATGCACCAGCTTA
TTCTTACTGGAAATCAGTGATGCGTCAATTCTTTAAAAAGAAATCAACAGTAGTAATGTTGGGTATCTTGATTGCCATCG
TGTTGATGAGTTTCATCTATCCAATGTTCTCTAAATTTGACTTCAATGATGTCTCAAAAGTAAATGATTTCAGTTTGCGT
TATGTACATCCAAACGCTCAATACTGGTTCGGTACAGACAGTAATGGTAAGTCCCTCTTTGATAGTGTTTGGTTTGGAGC
TCGTAATTCTATCCTTATTGCTGTTATCGCTACCTTCCTTAATGTTGTCATTGGTTTGCTTGTAGGTGCTGTTTGGGGGA
TTTCTAAGACCTTCGATATGATTATGATGGAAATCTACAACATCATCTCAAATATTCCTGCCCTCCTTGTAGTTATCGTC
TTGACTTACTCATTGGGTGCTGGTTTCTGGAATATGATCTTTGCCATGACTGTCACAGGTTGGATTGGTATTGCTTATAC
CATTCGTATTCAAATCATGCGTTACCGTGATTTGGAGTACAACTTGGCTTCTCGTACACTGGGAACGCCAACTGCTAAGA
TTGTGGTTAAAAATATCATGCCACAACTTGTGTCAGTTATCGTAACTATGGCTAGTCAGCTTTTGCCAGGATTTATCTCT
TACGAAGCCTTCCTTTCATACTTTGGTTTGGGGCTTCCCGTTACGACGCCTAGTCTTGGTCGTTTGATTTCAGACTATGC
ACAGAACGTTACAGTCAATGCTTATCTCTTCTGGATTCCATTGACTACCTTGATTCTCGTTTCCCTTGCTCTCTTTATTG
TCGGTCAAAACTTGGCGGATGCCAGCGACCCACGTACGCATAGATAG

Domains

Predicted by InterproScan.

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-71)

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(125-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0F3HAC7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

98.377

100

0.984
  amiD Streptococcus thermophilus LMG 18311

97.403

100

0.974
  amiD Streptococcus thermophilus LMD-9

97.403

100

0.974

Multiple sequence alignment