Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   ACJWMD_RS02775 Genome accession   NZ_CP177182
Coordinates   540498..541991 (+) Length   497 a.a.
NCBI ID   WP_002886845.1    Uniprot ID   -
Organism   Streptococcus salivarius strain MRD6060     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 535498..546991
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJWMD_RS02765 amiA 536315..538285 (+) 1971 WP_002886843.1 peptide ABC transporter substrate-binding protein Regulator
  ACJWMD_RS02770 amiA 538467..540437 (+) 1971 WP_002886844.1 peptide ABC transporter substrate-binding protein Regulator
  ACJWMD_RS02775 amiC 540498..541991 (+) 1494 WP_002886845.1 ABC transporter permease Regulator
  ACJWMD_RS02780 amiD 541991..542917 (+) 927 WP_002886846.1 oligopeptide ABC transporter permease OppC Regulator
  ACJWMD_RS02785 amiE 542927..544012 (+) 1086 WP_002884363.1 ABC transporter ATP-binding protein Regulator
  ACJWMD_RS02790 amiF 544005..544934 (+) 930 WP_002886847.1 ATP-binding cassette domain-containing protein Regulator
  ACJWMD_RS02795 - 544985..545770 (-) 786 WP_002886848.1 hypothetical protein -
  ACJWMD_RS02800 - 545782..546480 (-) 699 WP_002886849.1 ABC transporter ATP-binding protein -
  ACJWMD_RS02805 - 546485..546862 (-) 378 WP_002886850.1 GntR family transcriptional regulator -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 55904.69 Da        Isoelectric Point: 10.0480

>NTDB_id=1086002 ACJWMD_RS02775 WP_002886845.1 540498..541991(+) (amiC) [Streptococcus salivarius strain MRD6060]
MKKYILLRTLRSLLSIFVVTALTYTIIYTMVPRRLIFRQDPNYNKIAKTADSKTNYENTIYERMGYIDYYDTKELQEKAS
SLDKSVTTKPTKENKAIYQKYVDSLGRGWRLHQFKQSKQFYATRDVPVLERVFGFYTHLFEFDNTGWVKDKTNPNLKRYI
RIENDPAIGWSVVGSGTKHKYLLYFNGQFPFVHQNFVKMNLGTSYPTYAEQGVLDVITQGQGQTQSSEVNFPTGKKISSV
DIYSRTYKSPSQADARDRSYYGNDPYTATKSRYQYPSMVTSSAIAGLIGLVLSYALAIPLGSYMARFKNTLFDSVSTGVL
TFLLSLPTIALVYIIRLIGSEIGLPDSFPILGAGDWRSYVLPSVILGLLSTPGLAIWIRRYMIDLQSQDFVRFARAKGLS
EQEISNKHIFKNAMVSLVSGIPASIVSVITGATLTETIFAFPGMGKMLIDSVRASNNAMVVGLVFIFTALTIFSLLVGDI
LMTIIDPRIKLTSKGGK

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=1086002 ACJWMD_RS02775 WP_002886845.1 540498..541991(+) (amiC) [Streptococcus salivarius strain MRD6060]
ATGAAAAAATATATTTTATTGAGAACCCTCCGTTCTCTATTGTCAATATTTGTCGTGACGGCCTTGACCTACACGATTAT
CTATACCATGGTGCCGAGGCGTCTGATTTTCAGACAGGACCCTAACTACAACAAGATTGCTAAGACAGCTGATTCTAAGA
CTAACTATGAAAATACAATCTATGAACGTATGGGTTACATTGATTACTATGACACCAAGGAGTTGCAGGAGAAAGCTAGC
TCACTTGATAAGTCAGTAACCACTAAGCCAACAAAAGAAAATAAAGCTATCTACCAAAAATATGTGGATAGTTTAGGACG
TGGCTGGCGTTTGCATCAATTCAAGCAAAGTAAACAATTCTATGCGACACGTGATGTGCCAGTACTTGAACGTGTGTTTG
GCTTCTATACGCACCTCTTTGAATTTGACAATACTGGATGGGTTAAAGATAAAACAAATCCAAACTTGAAGCGTTACATC
CGTATTGAAAATGATCCAGCTATCGGTTGGTCAGTTGTCGGTTCAGGAACTAAGCATAAATATTTGCTTTACTTTAACGG
TCAGTTCCCATTTGTTCACCAAAACTTTGTGAAGATGAACCTTGGTACCTCTTACCCAACTTATGCTGAGCAAGGTGTTC
TTGATGTTATTACGCAAGGCCAAGGGCAAACACAAAGCTCTGAGGTCAACTTTCCTACTGGTAAGAAGATATCTTCAGTA
GATATCTACTCTCGTACTTATAAATCACCAAGTCAGGCTGATGCTAGAGATCGTTCTTACTATGGAAATGACCCATACAC
AGCTACCAAGAGTCGCTACCAATACCCATCAATGGTGACAAGTTCTGCCATTGCAGGTTTGATTGGTTTGGTCTTGTCTT
ATGCTTTGGCAATTCCATTGGGATCATACATGGCACGCTTTAAAAACACACTCTTTGATAGTGTATCAACAGGTGTCTTG
ACTTTCTTGCTTTCACTACCAACCATCGCCTTGGTTTATATCATCCGTTTGATTGGTTCTGAGATTGGTCTTCCAGATTC
CTTCCCTATCTTGGGTGCAGGTGACTGGCGTTCATACGTCTTGCCATCTGTTATTCTCGGTCTCTTGTCAACACCAGGTC
TTGCTATTTGGATTCGTCGTTACATGATCGACTTGCAATCACAAGACTTCGTTCGTTTTGCACGTGCCAAAGGGTTGTCA
GAACAAGAAATTTCGAATAAACACATTTTCAAAAATGCTATGGTTTCCTTGGTTTCAGGAATCCCAGCATCTATCGTTAG
TGTTATCACAGGGGCAACTTTGACAGAAACAATCTTCGCCTTCCCTGGTATGGGTAAAATGTTGATTGACTCTGTCCGTG
CTTCAAATAACGCTATGGTTGTGGGTCTTGTATTTATTTTCACAGCCCTCACCATCTTCTCATTGCTTGTGGGTGATATC
CTTATGACTATAATTGACCCACGTATCAAATTGACATCTAAAGGAGGTAAATAA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(297-490)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus salivarius strain HSISS4

98.39

100

0.984
  amiC Streptococcus thermophilus LMG 18311

97.787

100

0.978
  amiC Streptococcus thermophilus LMD-9

97.787

100

0.978

Multiple sequence alignment