Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   ACJWMD_RS02765 Genome accession   NZ_CP177182
Coordinates   536315..538285 (+) Length   656 a.a.
NCBI ID   WP_002886843.1    Uniprot ID   -
Organism   Streptococcus salivarius strain MRD6060     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 531315..543285
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJWMD_RS02740 - 532035..532610 (-) 576 WP_002886838.1 CYTH domain-containing protein -
  ACJWMD_RS02745 - 532706..533380 (+) 675 WP_002886840.1 GTP pyrophosphokinase family protein -
  ACJWMD_RS02750 - 533352..534188 (+) 837 WP_002884507.1 NAD kinase -
  ACJWMD_RS02755 - 534185..535081 (+) 897 WP_002884380.1 RluA family pseudouridine synthase -
  ACJWMD_RS02760 pta 535095..536078 (+) 984 WP_002886841.1 phosphate acetyltransferase -
  ACJWMD_RS02765 amiA 536315..538285 (+) 1971 WP_002886843.1 peptide ABC transporter substrate-binding protein Regulator
  ACJWMD_RS02770 amiA 538467..540437 (+) 1971 WP_002886844.1 peptide ABC transporter substrate-binding protein Regulator
  ACJWMD_RS02775 amiC 540498..541991 (+) 1494 WP_002886845.1 ABC transporter permease Regulator
  ACJWMD_RS02780 amiD 541991..542917 (+) 927 WP_002886846.1 oligopeptide ABC transporter permease OppC Regulator

Sequence

Protein


Download         Length: 656 a.a.        Molecular weight: 71985.96 Da        Isoelectric Point: 5.0938

>NTDB_id=1086000 ACJWMD_RS02765 WP_002886843.1 536315..538285(+) (amiA) [Streptococcus salivarius strain MRD6060]
MKKSKWLALAGVALLSVGVLVACSSKSSTSGTTYGNIYNSDPETLDYITSNTGPTTTAVTNGVDGLMEADKYGNLVPSVA
EDWSVSQDGLTYTYKIRKGVKWYTSDGEEYAAVTAKDFVTGLKHAADSKAGALYLVQDSIAGLSDYLSGANKDFSSVGVK
AIDDHTLQYTLKKPEPYWNSKTTYGLLFPVNEDFLKSKGKDFGKSTDPTSILYNGPFLLKSLTAKSSIELTKNENYWDKK
NVHFDAIKLSYYDGSDQEAQERGFTDGAYSLARVFPTSSNYASVEKKYKDNIYYTAPGAWTSAIGVNIDRQNYKYTAKKT
DAEKSSTKKALLNKDFRQAINFAIDRTAYQSQVNGKDGAALALRNLFVPYDFVSAGDKTFGDLVTAKMSSYGDEWSGVNF
ADGQDGLYNAEKAKAEFAKAKEALQGEGVQFPIHLDLPVDQTAKLNVSKAQSLKQTIEKSLGSENVVIDINQLSSDDMQN
ATLNAANAAAEDWDISNGVIWSPDYQDPSTYLDIFKTTSSENTKTFMGYDDPNNAAAAQVGLKDYDALLDSAASETTDLN
ARYDRYAQAQAWLEDSSLVIPLTVGNGAAPVISRLTPFTGAYTQVGDKSSADYYKYVKPQEKVVTKKEYEQSREKWLKEK
KASNEKAQKDLEKHVK

Nucleotide


Download         Length: 1971 bp        

>NTDB_id=1086000 ACJWMD_RS02765 WP_002886843.1 536315..538285(+) (amiA) [Streptococcus salivarius strain MRD6060]
ATGAAAAAAAGCAAATGGTTAGCCCTTGCGGGTGTCGCCCTTCTAAGTGTTGGTGTGTTAGTGGCTTGTTCATCTAAGTC
AAGCACTAGCGGAACTACTTATGGTAACATTTACAATTCGGATCCAGAAACCTTGGATTATATTACATCAAATACAGGAC
CTACAACAACTGCTGTGACTAATGGTGTAGATGGACTTATGGAAGCGGACAAATATGGTAATCTTGTCCCTTCAGTGGCT
GAAGATTGGTCTGTCTCTCAAGATGGTCTGACTTATACTTATAAAATCCGTAAGGGTGTTAAATGGTATACTTCAGATGG
TGAAGAATATGCTGCTGTGACTGCTAAGGACTTTGTGACTGGTCTTAAGCATGCGGCGGATTCCAAAGCGGGTGCACTCT
ATTTGGTTCAAGATTCTATTGCTGGATTGTCTGACTACCTTTCTGGTGCCAATAAAGATTTCTCAAGTGTGGGTGTCAAG
GCAATTGATGATCATACTTTGCAGTATACGCTTAAGAAGCCAGAACCATACTGGAACTCTAAGACAACCTATGGTTTGCT
CTTCCCAGTAAATGAAGACTTCCTCAAGAGTAAAGGGAAAGATTTTGGTAAATCAACAGACCCAACCTCTATCCTCTATA
ATGGACCTTTCCTTCTCAAATCTTTGACAGCTAAATCTTCAATTGAGTTGACTAAGAATGAAAATTATTGGGACAAGAAA
AATGTACACTTTGATGCCATCAAATTGTCATATTATGATGGTTCGGATCAAGAGGCTCAAGAACGTGGTTTTACTGATGG
TGCCTATAGTTTGGCTCGTGTCTTCCCAACGAGTTCAAACTATGCTTCTGTAGAGAAGAAATATAAAGACAATATTTATT
ACACAGCACCAGGTGCCTGGACATCAGCTATTGGTGTTAATATTGACCGTCAAAATTACAAGTATACAGCTAAAAAGACG
GATGCTGAAAAATCATCAACTAAGAAAGCTCTTCTAAACAAGGACTTCCGTCAAGCAATTAACTTTGCCATTGACCGTAC
GGCTTATCAATCACAAGTTAATGGTAAAGATGGTGCAGCTCTTGCTCTTCGTAACCTCTTTGTACCTTATGATTTTGTCA
GTGCAGGCGATAAGACCTTTGGTGATCTTGTGACAGCAAAAATGAGCTCTTATGGTGATGAGTGGTCTGGTGTTAACTTT
GCGGATGGGCAAGATGGCCTTTATAATGCTGAAAAAGCTAAGGCTGAGTTTGCCAAAGCCAAAGAGGCTCTTCAAGGAGA
AGGTGTTCAATTCCCAATTCACTTGGACCTTCCAGTTGATCAAACAGCAAAACTCAACGTCTCTAAAGCCCAGTCTTTGA
AACAAACCATTGAAAAATCATTGGGTAGCGAAAATGTGGTAATTGATATTAACCAATTGTCATCTGATGATATGCAAAAT
GCAACCCTTAATGCGGCAAATGCAGCAGCAGAAGACTGGGATATTTCAAATGGTGTCATTTGGAGTCCAGACTATCAAGA
TCCATCAACTTATCTTGATATCTTCAAAACAACATCAAGTGAAAATACCAAGACTTTCATGGGTTATGATGATCCAAACA
ATGCAGCAGCAGCCCAAGTAGGTCTTAAAGATTATGATGCCTTGCTTGATTCAGCAGCTTCAGAAACAACAGACCTCAAC
GCACGTTACGACCGTTATGCTCAAGCTCAAGCTTGGTTGGAGGACAGCTCGCTTGTCATTCCTTTGACTGTTGGTAATGG
TGCAGCTCCAGTTATCTCACGCTTGACGCCATTTACAGGTGCTTATACACAGGTGGGTGATAAAAGCTCAGCAGACTACT
ACAAATATGTGAAACCACAAGAAAAAGTAGTTACTAAGAAAGAATATGAACAAAGTCGTGAAAAATGGCTTAAAGAAAAG
AAAGCATCTAACGAAAAAGCTCAAAAAGATCTTGAGAAACACGTTAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(75-520)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

93.293

100

0.933
  amiA3 Streptococcus thermophilus LMG 18311

89.802

100

0.899
  amiA3 Streptococcus thermophilus LMD-9

89.65

100

0.898

Multiple sequence alignment