Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   ACJWMD_RS01755 Genome accession   NZ_CP177182
Coordinates   329941..330531 (+) Length   196 a.a.
NCBI ID   WP_002886628.1    Uniprot ID   -
Organism   Streptococcus salivarius strain MRD6060     
Function   degradation of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 324941..335531
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJWMD_RS01745 - 326139..329048 (+) 2910 WP_002886626.1 glycoside hydrolase family 68 protein -
  ACJWMD_RS01750 upp 329138..329767 (+) 630 WP_002886627.1 uracil phosphoribosyltransferase -
  ACJWMD_RS01755 clpP 329941..330531 (+) 591 WP_002886628.1 ATP-dependent Clp protease proteolytic subunit ClpP Regulator
  ACJWMD_RS01760 - 330617..331066 (+) 450 WP_002886629.1 YlbF family regulator -
  ACJWMD_RS01765 - 331059..331340 (+) 282 WP_002886630.1 YlbG family protein -
  ACJWMD_RS01770 - 331495..332669 (+) 1175 Protein_299 ABC transporter substrate-binding protein -
  ACJWMD_RS01775 - 332713..333597 (+) 885 WP_002883743.1 branched-chain amino acid ABC transporter permease -
  ACJWMD_RS01780 - 333601..334551 (+) 951 WP_002886632.1 branched-chain amino acid ABC transporter permease -
  ACJWMD_RS01785 - 334554..335318 (+) 765 WP_002886634.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 21519.54 Da        Isoelectric Point: 4.4829

>NTDB_id=1085992 ACJWMD_RS01755 WP_002886628.1 329941..330531(+) (clpP) [Streptococcus salivarius strain MRD6060]
MIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGPVEDNMANSIIAQLLFLDAQDNTKDIYLYVNTPGGSVSAGLAIVDTMN
FIKSDVQTIVMGMAASMGTVIASSGTKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAAEHLLKTRNNLEQILADNSGQ
PIEKVHVDAERDNWMSAQETLEYGFIDEIMANNQLK

Nucleotide


Download         Length: 591 bp        

>NTDB_id=1085992 ACJWMD_RS01755 WP_002886628.1 329941..330531(+) (clpP) [Streptococcus salivarius strain MRD6060]
ATGATTCCTGTAGTAATTGAACAAACATCACGCGGTGAGCGTTCTTATGATATTTACTCACGTTTGCTCAAGGATCGTAT
CATCATGTTAACAGGTCCTGTTGAAGATAATATGGCAAACTCAATTATTGCCCAACTCTTGTTTTTGGATGCTCAAGACA
ATACAAAAGATATCTATCTTTATGTTAATACACCAGGTGGATCCGTTTCGGCTGGTCTTGCCATTGTTGATACAATGAAC
TTCATCAAGTCTGATGTTCAGACTATCGTTATGGGGATGGCAGCATCTATGGGAACAGTTATCGCTTCCAGCGGTACCAA
AGGTAAACGTTTCATGTTGCCAAATGCAGAGTACATGATTCACCAACCAATGGGCGGTACTGGTGGCGGTACGCAACAAA
CAGACATGGCTATCGCAGCTGAACACTTGCTCAAGACACGTAATAATTTGGAGCAAATCTTGGCAGATAATTCTGGACAA
CCAATTGAAAAAGTTCATGTAGACGCTGAACGTGACAATTGGATGAGTGCTCAAGAAACGCTTGAATATGGTTTCATCGA
TGAAATCATGGCTAATAACCAATTAAAATAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(11-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Streptococcus thermophilus LMG 18311

98.469

100

0.985
  clpP Streptococcus thermophilus LMD-9

98.469

100

0.985
  clpP Streptococcus pneumoniae Rx1

94.359

99.49

0.939
  clpP Streptococcus pneumoniae D39

94.359

99.49

0.939
  clpP Streptococcus pneumoniae R6

94.359

99.49

0.939
  clpP Streptococcus pneumoniae TIGR4

94.359

99.49

0.939
  clpP Streptococcus pyogenes JRS4

90.816

100

0.908
  clpP Streptococcus pyogenes MGAS315

90.816

100

0.908
  clpP Streptococcus mutans UA159

87.755

100

0.878
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

87.245

100

0.872
  clpP Lactococcus lactis subsp. cremoris KW2

86.735

100

0.867
  clpP Bacillus subtilis subsp. subtilis str. 168

58.163

100

0.582
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.031

98.469

0.571

Multiple sequence alignment