Detailed information NTG1085900

Bioinformatically predicted

Overview

• Name: comYD
• Type: Machinery gene
• Locus tag: ACJVG6_RS09545
• Genome accession: NZ_CP177180
• Coordinates: 2009068..2009496 (-)
• Length: 142 a.a.
• NCBI ID: WP_254593949.1
• Uniprot ID: -
• Organism: Streptococcus salivarius strain MRD-KRBY
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2004068..2014496

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACJVG6_RS09505	-	2004200..2004646 (-)	447	WP_037605837.1	hypothetical protein	-
ACJVG6_RS09510	-	2004720..2005376 (-)	657	WP_002887011.1	CPBP family intramembrane glutamic endopeptidase	-
ACJVG6_RS09515	-	2005388..2005585 (-)	198	WP_002885716.1	helix-turn-helix transcriptional regulator	-
ACJVG6_RS09520	-	2005836..2007029 (-)	1194	WP_002885831.1	acetate kinase	-
ACJVG6_RS09525	comYH	2007086..2008042 (-)	957	WP_002887012.1	class I SAM-dependent methyltransferase	Machinery gene
ACJVG6_RS09530	comGG	2008087..2008404 (-)	318	WP_002887013.1	competence type IV pilus minor pilin ComGG	-
ACJVG6_RS09535	comYF	2008382..2008819 (-)	438	WP_002887014.1	competence type IV pilus minor pilin ComGF	Machinery gene
ACJVG6_RS09540	comGE	2008806..2009036 (-)	231	WP_002887015.1	competence type IV pilus minor pilin ComGE	-
ACJVG6_RS09545	comYD	2009068..2009496 (-)	429	WP_254593949.1	competence type IV pilus minor pilin ComGD	Machinery gene
ACJVG6_RS09550	comYC	2009456..2009770 (-)	315	WP_170314557.1	competence type IV pilus major pilin ComGC	Machinery gene
ACJVG6_RS09555	comYB	2009779..2010879 (-)	1101	WP_139053029.1	competence type IV pilus assembly protein ComGB	Machinery gene
ACJVG6_RS09560	comGA/cglA/cilD	2010761..2011702 (-)	942	WP_002887018.1	competence type IV pilus ATPase ComGA	Machinery gene
ACJVG6_RS09565	-	2011781..2012143 (-)	363	WP_002887019.1	DUF1033 family protein	-

Sequence

Protein

• Length: 142 a.a.
• Molecular weight: 15757.21 Da
• Isoelectric Point: 10.3019

>NTDB_id=1085900 ACJVG6_RS09545 WP_254593949.1 2009068..2009496(-) (comYD) [Streptococcus salivarius strain MRD-KRBY]
MRNMVAKAVQWPIRAFTLLESLVTLAVVAFLTLSLSGSVTGIFQQVETNLFYLRFEYLYRDSQRLAAAEGSNVELQLSKD
KISNGKSSLVIPKNIHLDKGQTLVFDAKGGNSSLTKIRFSSDKEVVTYQLNMGSGKYKKTVS

Nucleotide

• Length: 429 bp

>NTDB_id=1085900 ACJVG6_RS09545 WP_254593949.1 2009068..2009496(-) (comYD) [Streptococcus salivarius strain MRD-KRBY]
ATGCGAAACATGGTGGCGAAAGCCGTTCAGTGGCCAATTAGAGCCTTTACCTTGTTGGAGAGTCTGGTGACTCTAGCAGT
GGTTGCCTTTCTCACTCTGAGTTTATCAGGCTCAGTCACAGGTATTTTTCAGCAGGTTGAGACTAATCTTTTTTATCTGC
GCTTTGAGTACCTATACCGAGATAGTCAGCGCTTGGCAGCGGCGGAAGGGTCCAATGTTGAATTGCAGTTGTCCAAGGAT
AAAATCAGTAACGGAAAATCAAGTCTGGTGATTCCTAAAAATATACATCTGGATAAGGGGCAGACGCTAGTGTTTGATGC
CAAAGGAGGCAACTCTAGCCTCACAAAGATTCGTTTTTCAAGTGATAAGGAGGTGGTGACCTATCAGCTTAACATGGGCA
GCGGTAAATATAAAAAGACGGTCTCTTAG

Domains

No domain identified.

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYD	Streptococcus mutans UA140	54.962	92.254	0.507
comYD	Streptococcus mutans UA159	54.962	92.254	0.507
comYD	Streptococcus gordonii str. Challis substr. CH1	42.857	98.592	0.423
comGD/cglD	Streptococcus pneumoniae Rx1	45.669	89.437	0.408
comGD/cglD	Streptococcus pneumoniae D39	45.669	89.437	0.408
comGD/cglD	Streptococcus pneumoniae R6	45.669	89.437	0.408
comGD/cglD	Streptococcus mitis NCTC 12261	45.669	89.437	0.408
comGD/cglD	Streptococcus pneumoniae TIGR4	44.882	89.437	0.401
comGD/cglD	Streptococcus mitis SK321	44.882	89.437	0.401
comGD	Lactococcus lactis subsp. cremoris KW2	41.667	92.958	0.387