Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   ACJVG6_RS09525 Genome accession   NZ_CP177180
Coordinates   2007086..2008042 (-) Length   318 a.a.
NCBI ID   WP_002887012.1    Uniprot ID   A0A1F2HRB9
Organism   Streptococcus salivarius strain MRD-KRBY     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2002086..2013042
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJVG6_RS09495 proC 2002628..2003398 (+) 771 WP_002887008.1 pyrroline-5-carboxylate reductase -
  ACJVG6_RS09500 - 2003425..2004087 (-) 663 WP_002887009.1 CPBP family intramembrane glutamic endopeptidase -
  ACJVG6_RS09505 - 2004200..2004646 (-) 447 WP_037605837.1 hypothetical protein -
  ACJVG6_RS09510 - 2004720..2005376 (-) 657 WP_002887011.1 CPBP family intramembrane glutamic endopeptidase -
  ACJVG6_RS09515 - 2005388..2005585 (-) 198 WP_002885716.1 helix-turn-helix transcriptional regulator -
  ACJVG6_RS09520 - 2005836..2007029 (-) 1194 WP_002885831.1 acetate kinase -
  ACJVG6_RS09525 comYH 2007086..2008042 (-) 957 WP_002887012.1 class I SAM-dependent methyltransferase Machinery gene
  ACJVG6_RS09530 comGG 2008087..2008404 (-) 318 WP_002887013.1 competence type IV pilus minor pilin ComGG -
  ACJVG6_RS09535 comYF 2008382..2008819 (-) 438 WP_002887014.1 competence type IV pilus minor pilin ComGF Machinery gene
  ACJVG6_RS09540 comGE 2008806..2009036 (-) 231 WP_002887015.1 competence type IV pilus minor pilin ComGE -
  ACJVG6_RS09545 comYD 2009068..2009496 (-) 429 WP_254593949.1 competence type IV pilus minor pilin ComGD Machinery gene
  ACJVG6_RS09550 comYC 2009456..2009770 (-) 315 WP_170314557.1 competence type IV pilus major pilin ComGC Machinery gene
  ACJVG6_RS09555 comYB 2009779..2010879 (-) 1101 WP_139053029.1 competence type IV pilus assembly protein ComGB Machinery gene
  ACJVG6_RS09560 comGA/cglA/cilD 2010761..2011702 (-) 942 WP_002887018.1 competence type IV pilus ATPase ComGA Machinery gene
  ACJVG6_RS09565 - 2011781..2012143 (-) 363 WP_002887019.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 318 a.a.        Molecular weight: 35760.65 Da        Isoelectric Point: 4.3805

>NTDB_id=1085898 ACJVG6_RS09525 WP_002887012.1 2007086..2008042(-) (comYH) [Streptococcus salivarius strain MRD-KRBY]
MNFEAIETAFELLLENVQTIENDLGTHAYDALIEQNSYYLGAEVANEVIIKNNEKLRALNLSKEEWRRAFQFLFIKLGQL
EALQANHQFTPDAIGFIILYLLEGLTKDDQLDVLEIGSGTGNLAETLLNNSQKTLNYMGMEVDDLLIDLSASIADVVNSS
AVYIQEDAVRPHILKESDVIISDLPVGYYPNDEIASRFKVAATGEHTYAHHLLMEQSLKYLKKDGIAILLAPTNLLTSPQ
SDLLKKWLSGYADIIAVITLPEAAFGNKHNMKSIFVLKKQTENAPETFVYPLSDLQNPEVLKDFTENFQKWKSDNSIF

Nucleotide


Download         Length: 957 bp        

>NTDB_id=1085898 ACJVG6_RS09525 WP_002887012.1 2007086..2008042(-) (comYH) [Streptococcus salivarius strain MRD-KRBY]
ATGAATTTTGAAGCAATTGAGACAGCCTTTGAGCTGTTGTTAGAAAATGTCCAAACCATTGAAAATGATCTTGGAACCCA
TGCTTACGATGCGCTTATTGAGCAAAATTCCTATTATTTGGGGGCTGAGGTAGCTAATGAAGTCATCATCAAAAACAACG
AGAAATTACGTGCCCTTAATCTAAGCAAAGAGGAGTGGCGTCGTGCTTTTCAGTTCTTGTTTATCAAGCTAGGGCAATTG
GAAGCCTTACAAGCCAATCACCAATTTACACCTGATGCTATTGGATTTATCATTCTTTACCTACTTGAAGGTTTGACCAA
GGACGACCAATTAGATGTTTTGGAGATTGGTTCGGGGACAGGAAACTTGGCTGAAACTCTTCTAAATAATAGTCAGAAAA
CCCTTAATTATATGGGAATGGAAGTTGACGATCTCCTTATCGATTTGTCAGCTAGTATTGCTGATGTGGTGAATTCGAGT
GCAGTTTACATTCAAGAAGATGCTGTTCGACCACATATTCTCAAAGAGAGTGATGTTATTATTAGTGACCTACCTGTTGG
TTACTACCCTAATGATGAAATTGCGAGTCGTTTCAAGGTTGCAGCAACCGGTGAACACACCTATGCCCATCACCTTCTCA
TGGAGCAATCACTCAAGTACCTGAAGAAAGATGGTATTGCTATTCTTTTGGCACCAACTAATCTTTTGACAAGCCCACAA
AGTGATTTGCTTAAGAAATGGCTATCAGGATATGCTGATATTATTGCCGTTATCACTCTTCCAGAAGCAGCTTTTGGCAA
TAAACATAACATGAAGTCTATCTTTGTGCTTAAAAAACAAACTGAAAATGCTCCTGAGACCTTCGTTTATCCACTTAGTG
ATTTGCAAAACCCAGAGGTCCTCAAAGATTTTACAGAGAATTTCCAAAAATGGAAATCAGATAATTCCATTTTCTAG

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(69-295)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1F2HRB9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA159

70.476

99.057

0.698
  comYH Streptococcus mutans UA140

70.476

99.057

0.698

Multiple sequence alignment