Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   ACK1LH_RS19690 Genome accession   NZ_CP176757
Coordinates   3875617..3875994 (-) Length   125 a.a.
NCBI ID   WP_203289127.1    Uniprot ID   -
Organism   Metabacillus indicus strain JKLC.Or24     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 3849881..3874959 3875617..3875994 flank 658


Gene organization within MGE regions


Location: 3849881..3875994
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACK1LH_RS19575 (ACK1LH_19575) - 3849881..3851434 (-) 1554 WP_411334061.1 lipopolysaccharide biosynthesis protein -
  ACK1LH_RS19580 (ACK1LH_19580) - 3851431..3852633 (-) 1203 WP_411334062.1 glycosyltransferase family 4 protein -
  ACK1LH_RS19585 (ACK1LH_19585) - 3852647..3853828 (-) 1182 WP_411334064.1 glycosyltransferase -
  ACK1LH_RS19590 (ACK1LH_19590) - 3853841..3855325 (-) 1485 WP_411334066.1 hypothetical protein -
  ACK1LH_RS19595 (ACK1LH_19595) - 3855330..3856232 (-) 903 WP_411334068.1 sugar transferase -
  ACK1LH_RS19600 (ACK1LH_19600) - 3856287..3856877 (-) 591 WP_411334069.1 acyltransferase -
  ACK1LH_RS19605 (ACK1LH_19605) - 3856858..3858177 (-) 1320 WP_411334071.1 glycosyltransferase family 4 protein -
  ACK1LH_RS19610 (ACK1LH_19610) - 3858161..3859393 (-) 1233 WP_411334073.1 glycosyltransferase -
  ACK1LH_RS19615 (ACK1LH_19615) - 3859408..3860673 (-) 1266 WP_411334075.1 glycosyltransferase family 4 protein -
  ACK1LH_RS19620 (ACK1LH_19620) gmd 3860933..3862012 (-) 1080 WP_411334076.1 GDP-mannose 4,6-dehydratase -
  ACK1LH_RS19625 (ACK1LH_19625) - 3862035..3862973 (-) 939 WP_411334077.1 GDP-L-fucose synthase family protein -
  ACK1LH_RS19630 (ACK1LH_19630) - 3862991..3863671 (-) 681 WP_411334078.1 sugar transferase -
  ACK1LH_RS19635 (ACK1LH_19635) galU 3863687..3864574 (-) 888 WP_411334080.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  ACK1LH_RS19640 (ACK1LH_19640) - 3864593..3865921 (-) 1329 WP_411335128.1 UDP-glucose dehydrogenase family protein -
  ACK1LH_RS19645 (ACK1LH_19645) - 3866142..3866906 (-) 765 WP_411334081.1 tyrosine-protein phosphatase -
  ACK1LH_RS19650 (ACK1LH_19650) - 3867013..3867654 (-) 642 WP_411334082.1 CpsD/CapB family tyrosine-protein kinase -
  ACK1LH_RS19655 (ACK1LH_19655) - 3867701..3868450 (-) 750 WP_411334084.1 YveK family protein -
  ACK1LH_RS19660 (ACK1LH_19660) - 3868677..3868808 (-) 132 WP_411334085.1 hypothetical protein -
  ACK1LH_RS19665 (ACK1LH_19665) - 3868963..3869106 (-) 144 WP_282033702.1 hypothetical protein -
  ACK1LH_RS19670 (ACK1LH_19670) - 3869367..3870977 (+) 1611 WP_411334086.1 SWIM zinc finger family protein -
  ACK1LH_RS19675 (ACK1LH_19675) - 3870967..3873723 (+) 2757 WP_411334088.1 DEAD/DEAH box helicase -
  ACK1LH_RS19680 (ACK1LH_19680) - 3874018..3874959 (+) 942 WP_203289125.1 hypothetical protein -
  ACK1LH_RS19685 (ACK1LH_19685) - 3874993..3875445 (+) 453 WP_203289126.1 DUF2613 domain-containing protein -
  ACK1LH_RS19690 (ACK1LH_19690) ssbB 3875617..3875994 (-) 378 WP_203289127.1 single-stranded DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 125 a.a.        Molecular weight: 13872.72 Da        Isoelectric Point: 9.5357

>NTDB_id=1082806 ACK1LH_RS19690 WP_203289127.1 3875617..3875994(-) (ssbB) [Metabacillus indicus strain JKLC.Or24]
MINSVVLVGRLTKDPEMRYTADGAPVANITLAVNRTFKNASGVMEADFVNCTLWRKTAENTANYCRKGSIVGVSGRIQTR
NYENSEGKRVYVTEVVADSVRFMGGQTRELAVTEKPQQLQQTQPQ

Nucleotide


Download         Length: 378 bp        

>NTDB_id=1082806 ACK1LH_RS19690 WP_203289127.1 3875617..3875994(-) (ssbB) [Metabacillus indicus strain JKLC.Or24]
GTGATCAATTCAGTTGTGCTCGTCGGACGCTTAACGAAAGATCCGGAAATGCGCTACACAGCAGACGGTGCCCCCGTCGC
CAACATCACACTTGCAGTCAACCGCACCTTTAAGAACGCATCAGGTGTCATGGAAGCAGACTTCGTCAACTGCACCCTCT
GGAGAAAAACCGCAGAAAACACGGCAAACTACTGCCGTAAAGGCTCCATCGTCGGCGTCTCCGGCCGCATTCAAACCCGC
AACTACGAAAACTCAGAAGGCAAGCGCGTCTACGTCACCGAAGTCGTAGCCGATTCCGTCCGCTTCATGGGCGGACAAAC
CCGCGAACTGGCCGTTACCGAAAAACCGCAGCAGCTGCAGCAAACCCAGCCGCAGTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

74.775

88.8

0.664
  ssbA Bacillus subtilis subsp. subtilis str. 168

67.961

82.4

0.56
  ssb Latilactobacillus sakei subsp. sakei 23K

61.682

85.6

0.528
  ssbB Streptococcus sobrinus strain NIDR 6715-7

48.544

82.4

0.4
  ssbB/cilA Streptococcus mitis NCTC 12261

44.66

82.4

0.368
  ssbB/cilA Streptococcus pneumoniae TIGR4

44.66

82.4

0.368
  ssbA Streptococcus mutans UA159

44.66

82.4

0.368

Multiple sequence alignment