Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   ACK1LH_RS19690 Genome accession   NZ_CP176757
Coordinates   3875617..3875994 (-) Length   125 a.a.
NCBI ID   WP_203289127.1    Uniprot ID   -
Organism   Metabacillus indicus strain JKLC.Or24     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3870617..3880994
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACK1LH_RS19675 (ACK1LH_19675) - 3870967..3873723 (+) 2757 WP_411334088.1 DEAD/DEAH box helicase -
  ACK1LH_RS19680 (ACK1LH_19680) - 3874018..3874959 (+) 942 WP_203289125.1 hypothetical protein -
  ACK1LH_RS19685 (ACK1LH_19685) - 3874993..3875445 (+) 453 WP_203289126.1 DUF2613 domain-containing protein -
  ACK1LH_RS19690 (ACK1LH_19690) ssbB 3875617..3875994 (-) 378 WP_203289127.1 single-stranded DNA-binding protein Machinery gene
  ACK1LH_RS19695 (ACK1LH_19695) - 3876151..3876549 (-) 399 WP_203289128.1 hypothetical protein -
  ACK1LH_RS19700 (ACK1LH_19700) - 3876843..3877253 (+) 411 WP_203289129.1 helix-turn-helix domain-containing protein -
  ACK1LH_RS19705 (ACK1LH_19705) - 3877351..3877806 (+) 456 WP_203289130.1 YwpF family protein -
  ACK1LH_RS19710 (ACK1LH_19710) - 3877825..3878100 (-) 276 WP_029284941.1 hypothetical protein -
  ACK1LH_RS19715 (ACK1LH_19715) - 3878333..3879058 (-) 726 WP_411334092.1 nuclease-related domain-containing protein -
  ACK1LH_RS19720 (ACK1LH_19720) fabZ 3879949..3880383 (-) 435 WP_203289131.1 3-hydroxyacyl-ACP dehydratase FabZ -
  ACK1LH_RS19725 (ACK1LH_19725) - 3880451..3880684 (-) 234 WP_411334094.1 DNA-directed RNA polymerase subunit beta -

Sequence

Protein


Download         Length: 125 a.a.        Molecular weight: 13872.72 Da        Isoelectric Point: 9.5357

>NTDB_id=1082806 ACK1LH_RS19690 WP_203289127.1 3875617..3875994(-) (ssbB) [Metabacillus indicus strain JKLC.Or24]
MINSVVLVGRLTKDPEMRYTADGAPVANITLAVNRTFKNASGVMEADFVNCTLWRKTAENTANYCRKGSIVGVSGRIQTR
NYENSEGKRVYVTEVVADSVRFMGGQTRELAVTEKPQQLQQTQPQ

Nucleotide


Download         Length: 378 bp        

>NTDB_id=1082806 ACK1LH_RS19690 WP_203289127.1 3875617..3875994(-) (ssbB) [Metabacillus indicus strain JKLC.Or24]
GTGATCAATTCAGTTGTGCTCGTCGGACGCTTAACGAAAGATCCGGAAATGCGCTACACAGCAGACGGTGCCCCCGTCGC
CAACATCACACTTGCAGTCAACCGCACCTTTAAGAACGCATCAGGTGTCATGGAAGCAGACTTCGTCAACTGCACCCTCT
GGAGAAAAACCGCAGAAAACACGGCAAACTACTGCCGTAAAGGCTCCATCGTCGGCGTCTCCGGCCGCATTCAAACCCGC
AACTACGAAAACTCAGAAGGCAAGCGCGTCTACGTCACCGAAGTCGTAGCCGATTCCGTCCGCTTCATGGGCGGACAAAC
CCGCGAACTGGCCGTTACCGAAAAACCGCAGCAGCTGCAGCAAACCCAGCCGCAGTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

74.775

88.8

0.664
  ssbA Bacillus subtilis subsp. subtilis str. 168

67.961

82.4

0.56
  ssb Latilactobacillus sakei subsp. sakei 23K

61.682

85.6

0.528
  ssbB Streptococcus sobrinus strain NIDR 6715-7

48.544

82.4

0.4
  ssbB/cilA Streptococcus mitis NCTC 12261

44.66

82.4

0.368
  ssbB/cilA Streptococcus pneumoniae TIGR4

44.66

82.4

0.368
  ssbA Streptococcus mutans UA159

44.66

82.4

0.368

Multiple sequence alignment