Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   ACK2VV_RS09740 Genome accession   NZ_CP176712
Coordinates   1986511..1986981 (-) Length   156 a.a.
NCBI ID   WP_000934762.1    Uniprot ID   -
Organism   Staphylococcus aureus strain GTVSS-008     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1981511..1991981
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACK2VV_RS09670 (ACK2VV_09670) rinB 1981774..1981923 (-) 150 WP_000595305.1 transcriptional activator RinB -
  ACK2VV_RS09675 (ACK2VV_09675) - 1981920..1982306 (-) 387 WP_000592201.1 hypothetical protein -
  ACK2VV_RS09680 (ACK2VV_09680) - 1982303..1982509 (-) 207 WP_000195803.1 DUF1381 domain-containing protein -
  ACK2VV_RS09685 (ACK2VV_09685) - 1982506..1982751 (-) 246 WP_001282074.1 hypothetical protein -
  ACK2VV_RS09690 (ACK2VV_09690) - 1982788..1983321 (-) 534 WP_001061838.1 dUTPase -
  ACK2VV_RS09695 (ACK2VV_09695) - 1983336..1983497 (-) 162 WP_000889682.1 hypothetical protein -
  ACK2VV_RS09700 (ACK2VV_09700) - 1983498..1983752 (-) 255 WP_223297745.1 hypothetical protein -
  ACK2VV_RS09705 (ACK2VV_09705) - 1983781..1983954 (-) 174 WP_000028424.1 hypothetical protein -
  ACK2VV_RS09710 (ACK2VV_09710) - 1983944..1984195 (-) 252 WP_001065046.1 DUF1024 family protein -
  ACK2VV_RS09715 (ACK2VV_09715) - 1984210..1984452 (-) 243 WP_000131381.1 phi PVL orf 51-like protein -
  ACK2VV_RS09720 (ACK2VV_09720) - 1984456..1984824 (-) 369 WP_000101270.1 SA1788 family PVL leukocidin-associated protein -
  ACK2VV_RS09725 (ACK2VV_09725) - 1984837..1985292 (-) 456 WP_000401965.1 RusA family crossover junction endodeoxyribonuclease -
  ACK2VV_RS09730 (ACK2VV_09730) - 1985301..1985519 (-) 219 WP_000338527.1 hypothetical protein -
  ACK2VV_RS09735 (ACK2VV_09735) - 1985526..1986481 (-) 956 Protein_1878 DnaD domain protein -
  ACK2VV_RS09740 (ACK2VV_09740) ssbA 1986511..1986981 (-) 471 WP_000934762.1 single-stranded DNA-binding protein Machinery gene
  ACK2VV_RS09745 (ACK2VV_09745) - 1986982..1987599 (-) 618 WP_072353921.1 MBL fold metallo-hydrolase -
  ACK2VV_RS09750 (ACK2VV_09750) - 1987680..1988600 (-) 921 WP_000138475.1 recombinase RecT -
  ACK2VV_RS09755 (ACK2VV_09755) - 1988602..1990557 (-) 1956 WP_048519603.1 AAA family ATPase -
  ACK2VV_RS09760 (ACK2VV_09760) - 1990554..1990817 (-) 264 WP_001205732.1 hypothetical protein -
  ACK2VV_RS09765 (ACK2VV_09765) - 1990826..1991086 (-) 261 WP_000291489.1 DUF1108 family protein -
  ACK2VV_RS09770 (ACK2VV_09770) - 1991179..1991340 (-) 162 WP_000066020.1 DUF1270 domain-containing protein -
  ACK2VV_RS09775 (ACK2VV_09775) - 1991337..1991657 (-) 321 WP_001120935.1 DUF771 domain-containing protein -
  ACK2VV_RS09780 (ACK2VV_09780) - 1991716..1991943 (+) 228 WP_000801108.1 hypothetical protein -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 17673.58 Da        Isoelectric Point: 5.2670

>NTDB_id=1082604 ACK2VV_RS09740 WP_000934762.1 1986511..1986981(-) (ssbA) [Staphylococcus aureus strain GTVSS-008]
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVVADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANCPIEIDDNDLPF

Nucleotide


Download         Length: 471 bp        

>NTDB_id=1082604 ACK2VV_RS09740 WP_000934762.1 1986511..1986981(-) (ssbA) [Staphylococcus aureus strain GTVSS-008]
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTAAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTGTTGCCGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATACCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATTGTCCGATTGAAATAGATGACAATGATTTACCATTCTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

55.932

100

0.635
  ssb Latilactobacillus sakei subsp. sakei 23K

51.176

100

0.558
  ssbB Bacillus subtilis subsp. subtilis str. 168

59.434

67.949

0.404
  ssb Vibrio cholerae strain A1552

31.492

100

0.365
  ssb Neisseria meningitidis MC58

32.948

100

0.365
  ssb Neisseria gonorrhoeae MS11

32.948

100

0.365
  ssb Glaesserella parasuis strain SC1401

32.203

100

0.365

Multiple sequence alignment