Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   ACJJVB_RS29035 Genome accession   NZ_CP174502
Coordinates   6499221..6501308 (-) Length   695 a.a.
NCBI ID   WP_043313184.1    Uniprot ID   -
Organism   Pseudomonas citronellolis strain ISHS.CFo     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6494221..6506308
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJJVB_RS29020 (ACJJVB_29020) - 6495853..6497529 (-) 1677 WP_407733080.1 AAA family ATPase -
  ACJJVB_RS29025 (ACJJVB_29025) aroB 6497536..6498642 (-) 1107 WP_043313186.1 3-dehydroquinate synthase -
  ACJJVB_RS29030 (ACJJVB_29030) aroK 6498694..6499212 (-) 519 WP_024128057.1 shikimate kinase AroK -
  ACJJVB_RS29035 (ACJJVB_29035) pilQ 6499221..6501308 (-) 2088 WP_043313184.1 type IV pilus secretin PilQ Machinery gene
  ACJJVB_RS29040 (ACJJVB_29040) pilP 6501365..6501889 (-) 525 WP_043313182.1 type 4a pilus biogenesis lipoprotein PilP -
  ACJJVB_RS29045 (ACJJVB_29045) pilO 6501886..6502542 (-) 657 WP_009613645.1 type 4a pilus biogenesis protein PilO -
  ACJJVB_RS29050 (ACJJVB_29050) pilN 6502539..6503138 (-) 600 WP_009613648.1 type 4a pilus biogenesis protein PilN -
  ACJJVB_RS29055 (ACJJVB_29055) pilM 6503138..6504202 (-) 1065 WP_009613650.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 695 a.a.        Molecular weight: 74851.00 Da        Isoelectric Point: 5.2731

>NTDB_id=1077411 ACJJVB_RS29035 WP_043313184.1 6499221..6501308(-) (pilQ) [Pseudomonas citronellolis strain ISHS.CFo]
MNRTMTRLGFALLAGLFAPSLLAANLQRVDVASLPGDRVELKLGFDEPVAAPRGYTIEQPARIALDLPGVQNKLGSKNRE
LGVGNARSLTVVEAKDRTRLIINLTTLVPYSTRAQGNDLIILVGQGGGAPAAAASSAPSVAPAYAAAPRPAQPKPYVPVG
KAIRNIDFQRGEQGEGNVVIDLSDPSVSPDIQEQGGKIRLDFPRTQLPDSLRVRLDVKDFATPVQFVNASAAGDKASIVI
EPSGLYDYLVFQTDNRMTVSIKPMTANEAEKRKKDSFAYTGEKLSLNFQDIDVRSVLQLIADFTDLNLVASDTVQGNITL
RLQNVPWDQALDLVLKTKGLDKRKVGNVLLVAPADEIAARERQELEAQKQIAELAPLRRELIQVNYAKASDIAKLFQSVT
GTSSGPGAQPAAGTDNRGSITVDDRTNAIIAYQTQDRLDELRRIVSQLDIPVRQVMIEARIVEASVDYTKELGVQWGGSL
NNRGNFNITGGANSTSNTFVDLGVSTASPTSGIGIGFVTDNTTLDLQLNAMEKTGNGEVVSQPKVVTSDKETAKILKGSE
IPYQEASSSGATSVSFKEAALSLEVTPQITPDNRIIMQVKVNKDEPDYQNALLGVPPIKKNEVNAKVLVNDGETIVIGGV
FSNTQTKTTSKVPFLGDVPVVGRLFKNDYVTDTKNELLVFLTPRIMNNQAIAIDR

Nucleotide


Download         Length: 2088 bp        

>NTDB_id=1077411 ACJJVB_RS29035 WP_043313184.1 6499221..6501308(-) (pilQ) [Pseudomonas citronellolis strain ISHS.CFo]
ATGAACAGAACTATGACCCGCCTGGGCTTTGCCCTGTTGGCCGGCCTTTTCGCGCCGAGCCTGCTCGCCGCCAACCTGCA
GCGCGTAGACGTGGCCTCGCTGCCGGGGGATCGCGTGGAGCTCAAGCTGGGCTTCGACGAGCCGGTGGCCGCGCCGCGTG
GCTACACCATCGAGCAGCCGGCGCGCATCGCCCTGGACCTGCCGGGCGTGCAGAACAAGCTGGGCAGCAAGAACCGCGAG
CTGGGCGTGGGCAACGCGCGCAGCCTGACCGTGGTCGAGGCCAAGGACCGCACCCGCCTGATCATCAACCTGACCACCCT
GGTGCCGTATTCCACCCGCGCCCAGGGCAACGACCTGATCATCCTGGTCGGCCAGGGTGGCGGCGCGCCCGCCGCGGCGG
CCAGCTCCGCGCCGAGCGTGGCCCCGGCCTATGCCGCGGCGCCTCGCCCGGCGCAGCCCAAGCCCTACGTGCCGGTGGGC
AAGGCGATCCGCAACATCGACTTCCAGCGCGGCGAGCAGGGCGAGGGCAACGTGGTCATCGACCTGTCCGACCCGAGCGT
CAGCCCGGACATCCAGGAGCAGGGCGGCAAGATCCGCCTGGACTTCCCGCGCACCCAGCTGCCCGACAGCCTGCGCGTGC
GCCTGGACGTGAAGGACTTCGCCACCCCGGTGCAGTTCGTCAACGCCTCGGCTGCCGGCGACAAGGCCAGCATCGTCATC
GAGCCCAGCGGCCTGTACGACTACCTGGTGTTCCAGACCGACAACCGCATGACCGTCAGCATCAAGCCGATGACCGCCAA
CGAGGCCGAGAAGCGCAAGAAGGACAGCTTCGCCTACACCGGCGAGAAGCTGTCGCTGAACTTCCAGGACATCGACGTGC
GCTCGGTGCTGCAGCTGATCGCCGACTTCACCGACCTGAACCTGGTGGCCTCGGACACCGTGCAGGGCAACATCACCCTG
CGCCTGCAGAACGTGCCCTGGGACCAGGCGCTGGACCTGGTGCTCAAGACCAAGGGCCTGGACAAGCGCAAGGTCGGCAA
CGTCCTGCTGGTGGCGCCGGCCGACGAGATCGCCGCGCGCGAGCGCCAGGAGCTGGAAGCGCAGAAGCAGATCGCCGAAC
TGGCGCCCCTGCGCCGCGAGCTGATCCAGGTGAACTACGCCAAGGCCTCCGACATCGCCAAGCTGTTCCAGTCCGTGACC
GGCACCAGTTCCGGCCCGGGCGCCCAGCCTGCCGCCGGGACCGACAACCGTGGCTCCATCACCGTCGACGACCGCACCAA
CGCCATCATCGCCTACCAGACCCAGGACCGCCTGGACGAGCTGCGCCGCATCGTCTCGCAGCTGGACATCCCGGTACGCC
AGGTGATGATCGAGGCGCGCATCGTCGAGGCCAGCGTCGACTACACCAAGGAGCTGGGGGTGCAGTGGGGTGGTTCGCTG
AATAATCGCGGCAACTTCAACATCACCGGTGGCGCCAACAGCACGAGCAATACCTTCGTCGATCTGGGCGTCAGCACCGC
GTCCCCGACCTCCGGCATCGGCATCGGCTTCGTCACCGACAACACCACCCTGGACCTGCAGCTCAACGCCATGGAGAAGA
CCGGTAACGGCGAGGTGGTGTCGCAGCCGAAGGTGGTCACCTCGGACAAGGAAACCGCGAAGATCCTCAAGGGCTCGGAG
ATTCCCTACCAGGAAGCCAGCTCCAGCGGCGCCACCTCGGTGTCCTTCAAGGAGGCTGCGCTGTCCCTGGAGGTCACTCC
GCAGATCACCCCGGACAACCGCATCATCATGCAGGTCAAGGTGAACAAGGACGAGCCCGACTACCAGAACGCGCTGCTCG
GCGTGCCGCCGATCAAGAAGAACGAGGTCAACGCCAAGGTGCTGGTCAACGACGGTGAAACCATCGTCATCGGCGGGGTG
TTCTCCAACACCCAGACCAAGACCACCTCCAAGGTCCCGTTCCTCGGCGACGTACCGGTCGTCGGCCGCCTGTTCAAGAA
CGACTATGTGACGGACACCAAGAACGAGCTTCTGGTTTTCCTCACTCCCCGGATCATGAATAATCAGGCCATTGCCATCG
ATCGTTGA

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(381-454)

Secretin and TonB N terminus short domain (STN)

(307-353)

Bacterial type II and III secretion system protein (Secretin)

(530-686)

AMIN domain (AMIN)

(40-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Pseudomonas aeruginosa PAK

77.04

100

0.801
  pilQ Acinetobacter baumannii strain A118

40.699

100

0.419
  pilQ Acinetobacter baumannii D1279779

40.699

100

0.419
  comQ Acinetobacter baylyi ADP1

41.463

100

0.416
  pilQ Legionella pneumophila strain Lp02

39.092

98.273

0.384
  pilQ Legionella pneumophila strain ERS1305867

39.092

98.273

0.384

Multiple sequence alignment