Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilB   Type   Machinery gene
Locus tag   ACIO06_RS03675 Genome accession   NZ_CP173230
Coordinates   777952..779376 (-) Length   474 a.a.
NCBI ID   WP_035687022.1    Uniprot ID   -
Organism   Avibacterium paragallinarum strain npAP/GA-USA/20231216/S1-2     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 772952..784376
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACIO06_RS03650 (ACIO06_03650) - 773277..774140 (-) 864 WP_410680653.1 phosphatidate cytidylyltransferase -
  ACIO06_RS03655 (ACIO06_03655) uppS 774144..774872 (-) 729 WP_410680654.1 polyprenyl diphosphate synthase -
  ACIO06_RS03660 (ACIO06_03660) ispC 775027..776223 (-) 1197 WP_410680655.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  ACIO06_RS03665 (ACIO06_03665) frr 776404..776961 (-) 558 WP_017807054.1 ribosome recycling factor -
  ACIO06_RS03670 (ACIO06_03670) pyrH 776986..777702 (-) 717 WP_035687020.1 UMP kinase -
  ACIO06_RS03675 (ACIO06_03675) pilB 777952..779376 (-) 1425 WP_035687022.1 GspE/PulE family protein Machinery gene
  ACIO06_RS03680 (ACIO06_03680) pilA 779389..779820 (-) 432 WP_035687024.1 pilin Machinery gene
  ACIO06_RS03685 (ACIO06_03685) ampD 779960..780514 (+) 555 WP_410680656.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  ACIO06_RS03690 (ACIO06_03690) rppH 781604..782197 (+) 594 WP_264245767.1 RNA pyrophosphohydrolase -
  ACIO06_RS03695 (ACIO06_03695) - 782200..782991 (+) 792 WP_410680657.1 sulfite exporter TauE/SafE family protein -
  ACIO06_RS03700 (ACIO06_03700) lgt 783001..783801 (+) 801 WP_410680658.1 prolipoprotein diacylglyceryl transferase -

Sequence

Protein


Download         Length: 474 a.a.        Molecular weight: 53762.51 Da        Isoelectric Point: 5.2146

>NTDB_id=1070952 ACIO06_RS03675 WP_035687022.1 777952..779376(-) (pilB) [Avibacterium paragallinarum strain npAP/GA-USA/20231216/S1-2]
MAEYSLDEDDIVYAVDGKCFEITPHLWQQNKQQKDILIRYLAVPLQEDEHTLWLGIDDLTNLSACESFSFLTGKIVEPIL
LSEQDLKSLLQKLSPTLVEEPALLDFYQSSISPYSENQPEKLDEPIIQILNKVFESAMQLNASDIHLEPQNEQLQIRFRI
DGVLQHQPPISKQMSQRLISRLKLLARLDLSETRLPQDGRFHFKTTFSDILDFRISTLPTYYGEKAVLRLQKNKPVTLDF
SELGMTAIQRKTLQDALSQPQGLILVTGPTGSGKSITLYTALEWLNQSEKHILTAEDPIEIELPGIIQTQINPQIGLDFN
RLLRTFLRQDPDIIMLGEIRDAESAAIALRAAQTGHLVLSTLHTNNAHSAIARLLQLGIQQYEIESCLLLVIAQRLVRKK
CLHKTKNCECYQGYSGRTGIYQFLQAIFDSNTGQISYQTDYPSLWDSASHKIAQGITDIAELERVLGRHTKAEL

Nucleotide


Download         Length: 1425 bp        

>NTDB_id=1070952 ACIO06_RS03675 WP_035687022.1 777952..779376(-) (pilB) [Avibacterium paragallinarum strain npAP/GA-USA/20231216/S1-2]
ATGGCTGAGTATTCTTTAGACGAGGACGACATTGTATATGCTGTTGATGGAAAATGCTTTGAAATAACACCGCACTTATG
GCAACAAAATAAGCAGCAAAAAGATATTTTAATACGTTATTTAGCAGTACCTTTACAGGAGGATGAACATACACTTTGGC
TTGGTATTGATGACTTAACAAATCTATCGGCTTGTGAAAGTTTTTCATTTCTAACAGGAAAAATAGTTGAGCCGATTTTG
TTATCAGAACAAGATTTAAAATCGCTATTACAGAAGTTATCTCCCACATTAGTAGAAGAGCCGGCATTACTTGATTTTTA
TCAATCGTCTATTTCACCTTATAGCGAAAATCAACCAGAAAAACTTGATGAACCAATTATTCAAATACTAAATAAAGTTT
TTGAATCGGCAATGCAATTAAATGCCTCAGATATTCATTTAGAGCCACAAAATGAGCAATTACAGATCCGCTTCCGTATT
GACGGGGTATTGCAACATCAGCCTCCTATTTCTAAACAAATGAGCCAACGTTTGATTTCTCGTTTAAAACTTCTAGCTCG
TCTTGATCTTAGCGAAACTCGCTTACCACAAGATGGAAGATTTCATTTCAAAACGACATTTTCCGATATATTAGACTTCC
GTATATCGACATTACCTACATATTATGGAGAAAAAGCGGTACTACGTTTACAAAAAAATAAACCTGTTACCTTGGATTTT
TCTGAGCTGGGGATGACAGCGATACAACGAAAAACCTTACAAGATGCTTTATCTCAACCTCAAGGACTCATTTTAGTAAC
GGGGCCAACCGGGAGTGGAAAAAGTATTACGCTCTATACAGCATTAGAATGGCTTAATCAATCGGAAAAACATATTCTAA
CAGCAGAAGATCCGATTGAAATAGAACTTCCAGGGATTATCCAAACGCAAATTAACCCACAAATTGGTTTAGATTTTAAC
CGTTTGTTGCGTACATTTTTACGTCAGGATCCAGACATTATTATGCTTGGTGAGATCCGTGATGCAGAAAGTGCAGCGAT
TGCGTTACGTGCAGCACAAACTGGACATTTAGTCCTTTCAACATTACATACAAATAATGCACATTCAGCTATTGCTCGCT
TGTTACAGCTTGGTATTCAACAATATGAAATCGAAAGTTGTTTATTATTAGTGATTGCCCAGCGTTTAGTCCGTAAAAAA
TGTCTACACAAAACGAAAAATTGCGAATGTTATCAAGGTTATAGTGGGCGTACTGGTATTTATCAATTTTTACAAGCTAT
TTTTGATTCAAATACAGGGCAAATTTCTTATCAAACCGATTATCCCTCATTATGGGATAGTGCTTCACATAAAATAGCAC
AAGGTATCACAGATATTGCTGAATTAGAACGAGTTTTAGGTAGGCATACAAAAGCTGAACTATAG

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(132-399)

Type II secretion system (T2SS), protein E, N-terminal domain (MshEN)

(17-95)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilB Haemophilus influenzae Rd KW20

64.693

99.789

0.646
  pilB Haemophilus influenzae 86-028NP

63.924

100

0.639
  pilB Glaesserella parasuis strain SC1401

57.263

100

0.574
  pilB Legionella pneumophila strain ERS1305867

39.634

100

0.411
  pilB Vibrio campbellii strain DS40M4

40.206

100

0.411
  pilB Vibrio parahaemolyticus RIMD 2210633

39.794

100

0.407
  pilB Vibrio cholerae strain A1552

39.419

100

0.401
  pilB Acinetobacter baylyi ADP1

37.626

100

0.395
  pilF Neisseria gonorrhoeae MS11

37.317

100

0.376
  pilB Acinetobacter baumannii D1279779

36.495

100

0.373

Multiple sequence alignment