Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | ACIO06_RS03680 | Genome accession | NZ_CP173230 |
| Coordinates | 779389..779820 (-) | Length | 143 a.a. |
| NCBI ID | WP_035687024.1 | Uniprot ID | A0A0F5ESJ8 |
| Organism | Avibacterium paragallinarum strain npAP/GA-USA/20231216/S1-2 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 774389..784820
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACIO06_RS03660 (ACIO06_03660) | ispC | 775027..776223 (-) | 1197 | WP_410680655.1 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase | - |
| ACIO06_RS03665 (ACIO06_03665) | frr | 776404..776961 (-) | 558 | WP_017807054.1 | ribosome recycling factor | - |
| ACIO06_RS03670 (ACIO06_03670) | pyrH | 776986..777702 (-) | 717 | WP_035687020.1 | UMP kinase | - |
| ACIO06_RS03675 (ACIO06_03675) | pilB | 777952..779376 (-) | 1425 | WP_035687022.1 | GspE/PulE family protein | Machinery gene |
| ACIO06_RS03680 (ACIO06_03680) | pilA | 779389..779820 (-) | 432 | WP_035687024.1 | pilin | Machinery gene |
| ACIO06_RS03685 (ACIO06_03685) | ampD | 779960..780514 (+) | 555 | WP_410680656.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| ACIO06_RS03690 (ACIO06_03690) | rppH | 781604..782197 (+) | 594 | WP_264245767.1 | RNA pyrophosphohydrolase | - |
| ACIO06_RS03695 (ACIO06_03695) | - | 782200..782991 (+) | 792 | WP_410680657.1 | sulfite exporter TauE/SafE family protein | - |
| ACIO06_RS03700 (ACIO06_03700) | lgt | 783001..783801 (+) | 801 | WP_410680658.1 | prolipoprotein diacylglyceryl transferase | - |
| ACIO06_RS03705 (ACIO06_03705) | - | 783813..784664 (+) | 852 | WP_410680659.1 | thymidylate synthase | - |
Sequence
Protein
Download Length: 143 a.a. Molecular weight: 15205.70 Da Isoelectric Point: 9.8115
>NTDB_id=1070953 ACIO06_RS03680 WP_035687024.1 779389..779820(-) (pilA) [Avibacterium paragallinarum strain npAP/GA-USA/20231216/S1-2]
MQNPTHLKIKKGFTLIELMIVIAIVAILATIAIPAYQNYTKKAAISELIQAASPYRSEVELCIYNTGATTKCNAGSNGIQ
KKLTNKGKVASIDVQKGTITVKGKDNLSDITYSLKASGDASKGVSWTVNCGKSVEFFPAGFCG
MQNPTHLKIKKGFTLIELMIVIAIVAILATIAIPAYQNYTKKAAISELIQAASPYRSEVELCIYNTGATTKCNAGSNGIQ
KKLTNKGKVASIDVQKGTITVKGKDNLSDITYSLKASGDASKGVSWTVNCGKSVEFFPAGFCG
Nucleotide
Download Length: 432 bp
>NTDB_id=1070953 ACIO06_RS03680 WP_035687024.1 779389..779820(-) (pilA) [Avibacterium paragallinarum strain npAP/GA-USA/20231216/S1-2]
ATGCAAAACCCAACCCATTTAAAAATCAAAAAAGGCTTTACTTTGATTGAACTGATGATCGTGATTGCGATTGTGGCGAT
TTTAGCGACTATTGCGATTCCTGCTTATCAAAATTACACTAAGAAAGCGGCAATATCTGAGCTAATTCAAGCCGCAAGCC
CCTATCGTTCAGAGGTGGAATTATGTATTTATAATACGGGAGCTACCACGAAATGTAATGCGGGTTCAAATGGAATTCAG
AAAAAATTAACGAATAAAGGGAAAGTGGCTTCTATTGATGTACAAAAAGGCACGATTACGGTTAAAGGAAAAGATAATCT
TTCTGATATTACTTATTCATTAAAAGCCAGTGGAGATGCCTCAAAAGGTGTATCTTGGACGGTAAATTGTGGAAAATCTG
TAGAGTTTTTCCCAGCGGGATTTTGCGGATAA
ATGCAAAACCCAACCCATTTAAAAATCAAAAAAGGCTTTACTTTGATTGAACTGATGATCGTGATTGCGATTGTGGCGAT
TTTAGCGACTATTGCGATTCCTGCTTATCAAAATTACACTAAGAAAGCGGCAATATCTGAGCTAATTCAAGCCGCAAGCC
CCTATCGTTCAGAGGTGGAATTATGTATTTATAATACGGGAGCTACCACGAAATGTAATGCGGGTTCAAATGGAATTCAG
AAAAAATTAACGAATAAAGGGAAAGTGGCTTCTATTGATGTACAAAAAGGCACGATTACGGTTAAAGGAAAAGATAATCT
TTCTGATATTACTTATTCATTAAAAGCCAGTGGAGATGCCTCAAAAGGTGTATCTTGGACGGTAAATTGTGGAAAATCTG
TAGAGTTTTTCCCAGCGGGATTTTGCGGATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Haemophilus influenzae Rd KW20 |
59.31 |
100 |
0.601 |
| pilA | Haemophilus influenzae 86-028NP |
57.931 |
100 |
0.587 |
| pilA | Glaesserella parasuis strain SC1401 |
46.809 |
98.601 |
0.462 |
| pilA | Vibrio campbellii strain DS40M4 |
34.615 |
100 |
0.378 |
| pilA | Ralstonia pseudosolanacearum GMI1000 |
37.324 |
99.301 |
0.371 |