Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   ACIQTD_RS05325 Genome accession   NZ_CP173185
Coordinates   1071193..1071597 (-) Length   134 a.a.
NCBI ID   WP_003130657.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis strain MGEL24009     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1066193..1076597
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACIQTD_RS05295 - 1066349..1067881 (+) 1533 WP_081199531.1 Nramp family divalent metal transporter -
  ACIQTD_RS05300 - 1067983..1068951 (+) 969 WP_003130649.1 PhoH family protein -
  ACIQTD_RS05305 - 1069009..1069488 (+) 480 WP_201247958.1 NUDIX hydrolase -
  ACIQTD_RS05310 ybeY 1069640..1070128 (+) 489 WP_021722516.1 rRNA maturation RNase YbeY -
  ACIQTD_RS05315 - 1070112..1070567 (+) 456 WP_003130653.1 diacylglycerol kinase family protein -
  ACIQTD_RS05320 - 1070581..1071159 (+) 579 WP_270250167.1 nucleotidyltransferase family protein -
  ACIQTD_RS05325 comFC 1071193..1071597 (-) 405 WP_003130657.1 ComF family protein Machinery gene
  ACIQTD_RS05330 comFA 1071840..1073162 (-) 1323 WP_058212250.1 DEAD/DEAH box helicase Machinery gene
  ACIQTD_RS05335 - 1073219..1073848 (+) 630 WP_003130660.1 YigZ family protein -
  ACIQTD_RS05340 - 1073982..1074479 (+) 498 WP_012897708.1 VanZ family protein -
  ACIQTD_RS05345 - 1074527..1075546 (+) 1020 WP_012897709.1 DUF475 domain-containing protein -
  ACIQTD_RS05350 - 1075662..1076408 (+) 747 WP_320718947.1 bifunctional metallophosphatase/5'-nucleotidase -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15735.15 Da        Isoelectric Point: 9.8798

>NTDB_id=1070494 ACIQTD_RS05325 WP_003130657.1 1071193..1071597(-) (comFC) [Lactococcus lactis subsp. lactis strain MGEL24009]
MKDYFSQYKFVGDYRLYQIFEPYFKNISQKSPLVPIPISPKRLEERGFNQVTAFLQQDNFIELLEKENSVKQSSLNRKER
LESPNPFRLKKGLKVPTKVILIDDIYTTGTTLYHASQILKEAGVHEIRSFSLCR

Nucleotide


Download         Length: 405 bp        

>NTDB_id=1070494 ACIQTD_RS05325 WP_003130657.1 1071193..1071597(-) (comFC) [Lactococcus lactis subsp. lactis strain MGEL24009]
ATGAAAGATTATTTTAGCCAGTATAAATTTGTTGGAGATTATCGATTATACCAAATTTTTGAGCCCTATTTTAAAAATAT
TTCCCAAAAATCTCCTTTGGTTCCAATTCCTATTTCACCAAAAAGATTAGAGGAACGTGGTTTCAATCAAGTGACTGCTT
TTCTTCAACAAGATAATTTTATTGAACTTCTTGAAAAAGAGAATTCGGTCAAACAATCTAGCCTTAATCGAAAAGAACGA
TTGGAAAGTCCAAATCCTTTTCGATTAAAAAAAGGGCTAAAAGTCCCTACAAAAGTTATATTAATTGACGATATTTATAC
AACAGGTACAACCTTATATCACGCATCACAAATTCTAAAAGAAGCTGGTGTTCATGAAATAAGGAGCTTTTCTCTCTGCC
GTTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(91-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Lactococcus lactis subsp. cremoris KW2

67.91

100

0.679
  comFC/cflB Streptococcus mitis NCTC 12261

46.043

100

0.478
  comFC/cflB Streptococcus mitis SK321

46.043

100

0.478
  comFC/cflB Streptococcus pneumoniae Rx1

43.885

100

0.455
  comFC/cflB Streptococcus pneumoniae D39

43.885

100

0.455
  comFC/cflB Streptococcus pneumoniae R6

43.885

100

0.455
  comFC/cflB Streptococcus pneumoniae TIGR4

43.885

100

0.455
  comFC Bacillus subtilis subsp. subtilis str. 168

38.194

100

0.41
  comFC Latilactobacillus sakei subsp. sakei 23K

39.231

97.015

0.381

Multiple sequence alignment