Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   ACAM42_RS28355 Genome accession   NZ_AP028666
Coordinates   6161224..6161622 (-) Length   132 a.a.
NCBI ID   WP_021012487.1    Uniprot ID   T1XFY8
Organism   Variovorax sp. V35     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 6156224..6166622
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACAM42_RS28340 (GmRootV35_56090) - 6157936..6160263 (-) 2328 WP_095948039.1 methyl-accepting chemotaxis protein -
  ACAM42_RS28345 (GmRootV35_56100) - 6160306..6160839 (-) 534 WP_062479111.1 chemotaxis protein CheW -
  ACAM42_RS28350 (GmRootV35_56110) - 6160859..6161224 (-) 366 WP_062479114.1 PleD family two-component system response regulator -
  ACAM42_RS28355 (GmRootV35_56120) pilG 6161224..6161622 (-) 399 WP_021012487.1 PleD family two-component system response regulator Regulator
  ACAM42_RS28360 (GmRootV35_56130) - 6161704..6161874 (-) 171 WP_007838397.1 rubredoxin -
  ACAM42_RS28365 (GmRootV35_56140) - 6161986..6162951 (+) 966 WP_062479115.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  ACAM42_RS28370 (GmRootV35_56150) hemL 6162951..6164231 (+) 1281 WP_369630143.1 glutamate-1-semialdehyde 2,1-aminomutase -
  ACAM42_RS28375 (GmRootV35_56160) - 6164248..6165648 (-) 1401 WP_369630144.1 amidase family protein -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14706.88 Da        Isoelectric Point: 7.3215

>NTDB_id=106791 ACAM42_RS28355 WP_021012487.1 6161224..6161622(-) (pilG) [Variovorax sp. V35]
MGPNGSGYKVLVIDDSNTIRRSAEIFLKQGGHEVLLAEDGFDALSKVNDHKPHLIFCDILMPRLDGYQTCAIIKRNAHFS
NVPVVMLSSKDGVFDKARGRMVGSQDYLTKPFTKDQLLQAVQQFGIVQQEVQ

Nucleotide


Download         Length: 399 bp        

>NTDB_id=106791 ACAM42_RS28355 WP_021012487.1 6161224..6161622(-) (pilG) [Variovorax sp. V35]
ATGGGCCCGAATGGATCTGGTTACAAGGTGCTGGTCATCGATGACAGCAACACCATCCGGCGCAGTGCCGAGATTTTTCT
GAAGCAGGGTGGGCACGAGGTTCTTCTCGCGGAAGACGGCTTCGACGCGCTCTCCAAGGTTAACGACCACAAGCCTCACC
TGATTTTCTGCGACATCCTGATGCCTCGCCTCGACGGCTATCAGACCTGCGCCATCATCAAGCGCAACGCGCATTTCTCC
AATGTCCCGGTCGTCATGCTGTCTTCGAAAGATGGCGTATTCGACAAGGCCCGCGGCCGCATGGTCGGGTCCCAGGACTA
TCTCACCAAGCCATTCACCAAAGACCAGCTGCTGCAGGCCGTGCAGCAGTTTGGCATTGTTCAACAGGAAGTGCAGTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB T1XFY8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

62.281

86.364

0.538

Multiple sequence alignment