Detailed information NTG0106763

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: ACAM55_RS00010
• Genome accession: NZ_AP028664
• Coordinates: 713..1177 (+)
• Length: 154 a.a.
• NCBI ID: WP_369654105.1
• Uniprot ID: -
• Organism: Variovorax sp. V213
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1..6177

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACAM55_RS00010 (GmRootV213_00010)	pilA	713..1177 (+)	465	WP_369654105.1	pilin	Machinery gene
ACAM55_RS00015 (GmRootV213_00020)	-	1244..3160 (+)	1917	WP_369654106.1	hypothetical protein	-
ACAM55_RS00020 (GmRootV213_00030)	-	3150..3587 (+)	438	WP_369654107.1	GtrA family protein	-
ACAM55_RS00025 (GmRootV213_00040)	-	3600..5225 (+)	1626	WP_369654108.1	NAD(P)/FAD-dependent oxidoreductase	-
ACAM55_RS00030 (GmRootV213_00050)	-	5344..5829 (+)	486	WP_369654109.1	hypothetical protein	-

Sequence

Protein

• Length: 154 a.a.
• Molecular weight: 15769.18 Da
• Isoelectric Point: 9.6044

>NTDB_id=106763 ACAM55_RS00010 WP_369654105.1 713..1177(+) (pilA) [Variovorax sp. V213]
MNRRSIARNVQKGFTLIELMIVVAIIGILAAVALPAYQDYTVRARVSEAMVLASAAKTLVGENAAAAASSLTLGFDSASV
SSTKNVASMDISSAGAISVVTTAAAGGVTLVLTPTSDGSALSANTPPTKQIVWKCTVADTTKFKYVPSECRQAS

Nucleotide

• Length: 465 bp

>NTDB_id=106763 ACAM55_RS00010 WP_369654105.1 713..1177(+) (pilA) [Variovorax sp. V213]
ATGAACCGTCGTTCCATCGCACGCAACGTGCAAAAGGGTTTCACCCTGATCGAATTGATGATCGTTGTGGCGATCATTGG
TATCTTGGCTGCTGTGGCTCTGCCGGCGTACCAAGACTACACCGTGCGCGCACGCGTGTCGGAAGCCATGGTGCTTGCGT
CGGCGGCTAAGACGCTGGTCGGTGAAAACGCGGCTGCTGCGGCCTCCAGTCTCACCCTCGGCTTTGACTCTGCTTCCGTT
TCATCCACCAAGAACGTCGCCAGCATGGACATTAGCAGTGCAGGTGCCATTTCCGTGGTTACGACTGCGGCTGCAGGTGG
CGTTACGTTGGTTTTGACCCCGACTTCCGACGGGAGTGCGCTGTCCGCCAATACGCCTCCGACCAAGCAGATCGTATGGA
AATGCACGGTTGCGGATACCACCAAGTTCAAGTACGTTCCGAGCGAGTGCCGCCAAGCCTCCTAA

Domains

Predicted by InterproScan.

• Prokaryotic N-terminal methylation motif (N_methyl) (8-34)

• Pilin (bacterial filament) (Pilin) (42-151)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Ralstonia pseudosolanacearum GMI1000	50	100	0.539
comP	Acinetobacter baylyi ADP1	49.682	100	0.506
pilA2	Legionella pneumophila str. Paris	52.414	94.156	0.494
pilA2	Legionella pneumophila strain ERS1305867	51.034	94.156	0.481
pilE	Neisseria gonorrhoeae strain FA1090	41.975	100	0.442
pilA/pilA1	Eikenella corrodens VA1	38.365	100	0.396
pilA/pilAI	Pseudomonas stutzeri DSM 10701	36.842	98.701	0.364