Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   ACH3PB_RS14160 Genome accession   NZ_CP172312
Coordinates   3161642..3163858 (-) Length   738 a.a.
NCBI ID   WP_416395896.1    Uniprot ID   -
Organism   Allohahella sp. A8     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3156642..3168858
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACH3PB_RS14145 (ACH3PB_14145) - 3157922..3159781 (-) 1860 WP_416395893.1 SPOR domain-containing protein -
  ACH3PB_RS14150 (ACH3PB_14150) aroB 3159867..3160946 (-) 1080 WP_416395895.1 3-dehydroquinate synthase -
  ACH3PB_RS14155 (ACH3PB_14155) - 3160943..3161446 (-) 504 WP_416399465.1 shikimate kinase -
  ACH3PB_RS14160 (ACH3PB_14160) pilQ 3161642..3163858 (-) 2217 WP_416395896.1 type IV pilus secretin PilQ Machinery gene
  ACH3PB_RS14165 (ACH3PB_14165) - 3163855..3164433 (-) 579 WP_416395898.1 pilus assembly protein PilP -
  ACH3PB_RS14170 (ACH3PB_14170) - 3164433..3165059 (-) 627 WP_416395900.1 type 4a pilus biogenesis protein PilO -
  ACH3PB_RS14175 (ACH3PB_14175) - 3165056..3165622 (-) 567 WP_416395902.1 PilN domain-containing protein -
  ACH3PB_RS14180 (ACH3PB_14180) pilM 3165622..3166683 (-) 1062 WP_416395903.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 738 a.a.        Molecular weight: 79382.79 Da        Isoelectric Point: 4.6657

>NTDB_id=1066252 ACH3PB_RS14160 WP_416395896.1 3161642..3163858(-) (pilQ) [Allohahella sp. A8]
MMNRSTPSTRVVAARLQGRVSDIFKSPEKFMLLNAKSALLGTAALCMSGWLQAASLTGIDFGSLPGDRTEVRLSFDEAPP
EPQGYAISDPARIAIDLPGVDSALTERYHQLSKGNTQSVTILEASGRTRVIVNLLDLVPYATSVVGNQVVIQLGAAAGSD
LEMDAAAKTSSVASTDSGASKAKASKSAPSIKGVDFQRGEKGEGRLIVELSNKNISADMSEQGGNIRVVFRGAELPQDLR
RRLDVTDFATPVNTIETFREDGNVVMLIKPQGDFDYMAYQTDNSFTVAVEPVSQAEVEDRRKEQFPFSGEKLSLNFQDIE
VRSVLQLIADFTGLNLVASDTVDGRITLRLQNVPWDQALELVLKTKGLDKRKVGNVLLVAPAAEIAARERLELEANKQVQ
ALAPVRLEMLQINYAKAGDIVALLQSDAELVSSRGFISSDARTNTISIRETADKIQQVRELISTWDVPVSQVLIEARIVR
ARTDAIEDLGVRWGGGAAKTRGRNGFLVGGSQTTNTELNDGLGIAPGGDLAFTPGDVTLGFPDALAVDLGVNRTNASSFA
VGFRRSNISLDLELSAFELDGKGEIVAQPKIVTADRQTARIESGEEIPYQEASSSGATSISFKKAVLSLEVTPQITPDDN
IIMDLQIAQDSRGVVTAGIPSIDTNEIQTQVLVGNGQTIVLGGIFSSETSETTTKTPFLGDLPYIGALFRKTEKNDQRSE
LLVFITPRLIRSGLVDTR

Nucleotide


Download         Length: 2217 bp        

>NTDB_id=1066252 ACH3PB_RS14160 WP_416395896.1 3161642..3163858(-) (pilQ) [Allohahella sp. A8]
ATGATGAATCGTTCAACGCCATCCACTCGTGTAGTTGCAGCGCGTCTGCAGGGTCGAGTCAGCGATATTTTCAAGTCACC
GGAGAAATTCATGCTTTTAAACGCCAAAAGCGCATTGTTAGGAACCGCAGCGCTATGCATGAGCGGTTGGCTGCAGGCTG
CCAGCCTCACTGGCATTGACTTCGGCTCATTGCCGGGCGATAGAACAGAAGTTCGTCTGAGCTTCGACGAGGCGCCGCCT
GAGCCGCAGGGTTATGCGATTTCAGATCCAGCGCGGATTGCGATCGACCTGCCTGGCGTCGATAGTGCACTGACAGAACG
TTATCACCAGCTCTCCAAGGGTAACACGCAGAGTGTGACCATCCTGGAAGCGAGTGGCCGCACCCGCGTCATCGTCAACC
TGCTCGATCTGGTGCCCTATGCGACAAGCGTCGTCGGCAACCAGGTGGTGATACAGCTTGGTGCTGCTGCTGGGTCCGAT
CTTGAAATGGATGCGGCGGCAAAGACCTCGTCTGTAGCCAGTACCGACTCCGGCGCCTCGAAAGCCAAAGCTTCGAAAAG
CGCACCCTCTATAAAGGGTGTCGACTTTCAGCGTGGCGAGAAAGGTGAAGGTCGCCTGATCGTGGAATTGAGCAACAAGA
ACATCAGTGCCGACATGTCTGAGCAGGGTGGCAACATTCGCGTTGTCTTCAGGGGTGCAGAACTGCCGCAGGATCTGCGT
CGACGCCTTGATGTTACTGACTTCGCGACACCCGTCAATACGATCGAAACCTTCCGTGAAGACGGCAATGTGGTCATGCT
GATCAAGCCACAGGGTGATTTCGATTACATGGCGTATCAGACAGACAACAGCTTTACCGTGGCCGTCGAGCCAGTCAGCC
AGGCTGAAGTCGAAGATCGCCGCAAGGAACAGTTCCCGTTCTCTGGCGAGAAACTGTCGCTGAACTTCCAGGACATCGAA
GTCCGCTCGGTGCTGCAGCTTATCGCTGACTTCACTGGCCTGAACCTGGTCGCCTCCGACACGGTCGATGGTCGTATTAC
ATTGCGCCTGCAGAACGTGCCATGGGACCAGGCGCTCGAGCTCGTGCTCAAGACCAAGGGCCTGGACAAGCGCAAGGTTG
GCAACGTTCTTCTTGTCGCACCAGCGGCAGAAATTGCGGCGCGAGAGCGTCTGGAACTCGAAGCCAACAAGCAGGTCCAG
GCATTGGCGCCAGTGCGTCTTGAAATGCTGCAGATCAACTATGCCAAGGCAGGCGACATCGTCGCACTGCTGCAGTCTGA
CGCAGAGCTGGTGTCGAGCCGAGGTTTCATTTCTTCTGATGCCCGGACCAACACCATCAGCATTCGCGAAACTGCCGACA
AGATCCAGCAGGTTCGTGAGCTGATCTCTACCTGGGACGTGCCAGTATCACAGGTGCTTATCGAAGCGCGTATCGTTCGC
GCCAGAACCGATGCAATCGAAGATCTGGGTGTTCGTTGGGGCGGTGGTGCCGCAAAGACGAGAGGTCGTAACGGCTTCCT
GGTCGGCGGCTCCCAGACCACCAACACTGAACTGAACGATGGCTTGGGTATTGCGCCTGGTGGCGATCTGGCCTTCACAC
CGGGTGATGTCACCCTTGGCTTCCCGGACGCCCTGGCTGTCGACCTTGGGGTAAACAGAACCAATGCCTCGTCTTTCGCA
GTAGGCTTCCGTCGCAGCAACATATCGCTGGACCTGGAACTCTCTGCTTTCGAACTGGACGGCAAGGGTGAAATCGTGGC
CCAGCCCAAGATCGTAACGGCAGACCGTCAGACTGCTCGAATCGAGTCTGGTGAGGAGATTCCTTATCAGGAAGCCTCTT
CGAGTGGCGCGACATCGATCAGTTTCAAGAAGGCAGTGCTGTCCCTGGAGGTTACGCCACAGATCACGCCTGACGACAAC
ATCATCATGGACCTGCAGATTGCGCAGGATTCACGAGGTGTCGTCACCGCTGGTATCCCGAGTATCGATACCAACGAAAT
CCAGACGCAGGTTCTGGTAGGTAACGGCCAGACGATCGTACTTGGCGGTATCTTCTCTTCGGAAACGTCCGAGACCACGA
CCAAGACGCCGTTCCTGGGTGACCTGCCTTACATAGGTGCGCTGTTCCGCAAAACTGAAAAGAACGATCAGCGTTCGGAA
CTGCTTGTATTCATCACGCCGCGCCTCATCCGCAGTGGCCTGGTAGATACCCGATAA

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(409-471)

Bacterial type II and III secretion system protein (Secretin)

(578-731)

Secretin and TonB N terminus short domain (STN)

(335-381)

AMIN domain (AMIN)

(67-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Pseudomonas aeruginosa PAK

50.139

97.832

0.491
  comQ Acinetobacter baylyi ADP1

40.959

98.916

0.405
  pilQ Acinetobacter baumannii D1279779

40.082

99.729

0.4
  pilQ Acinetobacter baumannii strain A118

40.082

99.729

0.4
  pilQ Legionella pneumophila strain ERS1305867

40.292

92.818

0.374
  pilQ Legionella pneumophila strain Lp02

40.146

92.818

0.373

Multiple sequence alignment