Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ACHGPQ_RS16230 Genome accession   NZ_CP171856
Coordinates   3428381..3429646 (+) Length   421 a.a.
NCBI ID   WP_201016383.1    Uniprot ID   -
Organism   Ralstonia pseudosolanacearum strain NIB_Z_3685     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3423381..3434646
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACHGPQ_RS16210 (ACHGPQ_16210) ispB 3423828..3424796 (+) 969 WP_111374599.1 octaprenyl diphosphate synthase -
  ACHGPQ_RS16220 (ACHGPQ_16220) - 3425084..3426361 (+) 1278 WP_165591155.1 HlyC/CorC family transporter -
  ACHGPQ_RS16225 (ACHGPQ_16225) pilB 3426609..3428336 (+) 1728 WP_071507140.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACHGPQ_RS16230 (ACHGPQ_16230) pilC 3428381..3429646 (+) 1266 WP_201016383.1 type II secretion system F family protein Machinery gene
  ACHGPQ_RS16235 (ACHGPQ_16235) - 3429649..3430530 (+) 882 WP_029240316.1 prepilin peptidase -
  ACHGPQ_RS16240 (ACHGPQ_16240) coaE 3430543..3431157 (+) 615 WP_011002734.1 dephospho-CoA kinase -
  ACHGPQ_RS16245 (ACHGPQ_16245) zapD 3431275..3432033 (+) 759 WP_016723794.1 cell division protein ZapD -
  ACHGPQ_RS16250 (ACHGPQ_16250) yacG 3432044..3432259 (+) 216 WP_011002736.1 DNA gyrase inhibitor YacG -
  ACHGPQ_RS16255 (ACHGPQ_16255) - 3432252..3432713 (-) 462 WP_011002737.1 NUDIX domain-containing protein -
  ACHGPQ_RS16260 (ACHGPQ_16260) - 3432691..3433575 (-) 885 WP_019718219.1 ATP-binding protein -

Sequence

Protein


Download         Length: 421 a.a.        Molecular weight: 46495.80 Da        Isoelectric Point: 10.3077

>NTDB_id=1064537 ACHGPQ_RS16230 WP_201016383.1 3428381..3429646(+) (pilC) [Ralstonia pseudosolanacearum strain NIB_Z_3685]
MATRAPTANRSAAASARKTAATKAPTQYIFEWEGKDRKGKIFKGEMRAESITEVNAVLRKQGLSITKSKRRRAARGKKIV
PKDIAYFTRQLSTMLKAGVPLLQSVDIIARGHANPNFTQLLTEIRVDIESGSSMAQAFRRHPQHFDSLYCNLIDAGEQGG
ILDALLERLSMYMEKSIALKAQIKSAMIYPISVLTVAFLVTVVLMIFVVPAFKNVFASFGATLPAPTLVVMGISDFFVKW
WYIIICTPIVGIFLYVRAFKRSEKVQRNTHKAILKMPIFGSIIRKAAIARWTRTLATMFSAGTPLVESMESVAGAAGNWV
YYDATMEIQQAVRIGTSLTNAMQATHVFDNMVLQMTQIGEESGALDNMLLKVAEFYEREVDDAVANISALIEPLIIVILG
VLIGGMVVAMYLPIFKLGQVV

Nucleotide


Download         Length: 1266 bp        

>NTDB_id=1064537 ACHGPQ_RS16230 WP_201016383.1 3428381..3429646(+) (pilC) [Ralstonia pseudosolanacearum strain NIB_Z_3685]
ATGGCCACACGAGCACCGACCGCGAACCGGTCCGCCGCCGCATCGGCACGCAAGACCGCCGCCACGAAGGCGCCCACGCA
GTACATCTTCGAGTGGGAAGGCAAGGACCGCAAAGGCAAGATCTTCAAGGGCGAGATGCGGGCGGAGAGCATCACCGAAG
TCAATGCGGTGCTGCGCAAGCAAGGGCTGTCGATCACCAAGTCCAAGCGTCGGCGCGCCGCGCGCGGCAAGAAGATCGTA
CCCAAGGACATCGCCTACTTCACGCGCCAGCTGTCGACCATGCTGAAAGCGGGCGTGCCGCTGCTGCAATCGGTCGACAT
CATCGCGCGCGGGCACGCCAACCCGAACTTCACCCAGCTGCTGACGGAAATCCGTGTCGACATCGAGTCGGGCAGCAGCA
TGGCGCAGGCCTTCCGCCGCCATCCGCAGCACTTCGATTCGCTGTACTGCAACCTGATCGACGCCGGTGAGCAGGGCGGT
ATTCTCGACGCGCTGCTCGAGCGGCTGTCGATGTACATGGAAAAGTCGATCGCGCTGAAGGCGCAGATCAAGTCGGCCAT
GATCTATCCGATCTCGGTGCTGACGGTGGCTTTCCTGGTCACGGTGGTGCTGATGATCTTCGTGGTGCCGGCGTTCAAGA
ACGTGTTCGCCAGCTTCGGCGCCACGCTGCCGGCCCCGACGCTGGTGGTGATGGGCATTTCGGACTTCTTCGTGAAGTGG
TGGTACATCATCATCTGCACGCCCATTGTCGGCATCTTCCTGTATGTGCGGGCTTTCAAGCGCTCGGAGAAGGTGCAGCG
CAACACGCACAAGGCCATCCTGAAGATGCCGATCTTCGGCAGCATCATCCGCAAGGCCGCCATCGCGCGCTGGACGCGTA
CGCTGGCAACCATGTTCTCGGCCGGGACACCGCTGGTGGAATCGATGGAATCCGTCGCGGGCGCCGCCGGCAACTGGGTC
TACTATGACGCCACCATGGAGATCCAGCAGGCGGTGCGCATCGGTACCAGCCTCACCAACGCCATGCAGGCGACCCATGT
GTTCGACAACATGGTGCTGCAGATGACGCAGATCGGCGAGGAATCCGGCGCGCTGGACAACATGCTGCTGAAGGTGGCCG
AATTCTACGAGCGCGAGGTCGATGACGCGGTGGCCAACATCTCCGCCCTGATCGAGCCGCTCATCATCGTGATCCTGGGC
GTGCTGATCGGGGGCATGGTGGTTGCCATGTACCTGCCGATCTTCAAGCTGGGCCAAGTGGTCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(87-210)

Type II secretion system (T2SS), protein F (T2SSF)

(291-413)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

50.248

95.962

0.482
  pilG Neisseria gonorrhoeae MS11

49.875

94.774

0.473
  pilG Neisseria meningitidis 44/76-A

49.624

94.774

0.47
  pilC Acinetobacter baumannii D1279779

47.912

96.675

0.463
  pilC Acinetobacter baylyi ADP1

46.683

96.675

0.451
  pilC Legionella pneumophila strain ERS1305867

45.658

95.724

0.437
  pilC Vibrio campbellii strain DS40M4

39.753

96.2

0.382
  pilC Vibrio cholerae strain A1552

40

95.012

0.38

Multiple sequence alignment