Detailed information    

insolico Bioinformatically predicted

Overview


Name   pilB   Type   Machinery gene
Locus tag   ACF6ZU_RS08195 Genome accession   NZ_CP171224
Coordinates   1771477..1773177 (+) Length   566 a.a.
NCBI ID   WP_392891431.1    Uniprot ID   -
Organism   Pseudomonas migulae strain HY-2     
Function   power the assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 1766477..1778177
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACF6ZU_RS08175 (ACF6ZU_08175) - 1766652..1769600 (+) 2949 WP_392891425.1 DUF748 domain-containing protein -
  ACF6ZU_RS08180 (ACF6ZU_08180) - 1769600..1769896 (+) 297 WP_392893747.1 DUF2845 domain-containing protein -
  ACF6ZU_RS08185 (ACF6ZU_08185) - 1770179..1770532 (-) 354 WP_392891427.1 BON domain-containing protein -
  ACF6ZU_RS08190 (ACF6ZU_08190) - 1770841..1771251 (-) 411 WP_392891429.1 pilin -
  ACF6ZU_RS08195 (ACF6ZU_08195) pilB 1771477..1773177 (+) 1701 WP_392891431.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACF6ZU_RS08200 (ACF6ZU_08200) pilC 1773180..1774397 (+) 1218 WP_392891433.1 type II secretion system F family protein Machinery gene
  ACF6ZU_RS08205 (ACF6ZU_08205) pilD 1774399..1775271 (+) 873 WP_392891434.1 prepilin peptidase Machinery gene
  ACF6ZU_RS08210 (ACF6ZU_08210) coaE 1775268..1775891 (+) 624 WP_392891435.1 dephospho-CoA kinase -
  ACF6ZU_RS08215 (ACF6ZU_08215) yacG 1775888..1776088 (+) 201 WP_392891436.1 DNA gyrase inhibitor YacG -
  ACF6ZU_RS08220 (ACF6ZU_08220) - 1776098..1776313 (-) 216 WP_008033212.1 hypothetical protein -
  ACF6ZU_RS08225 (ACF6ZU_08225) - 1776377..1777066 (-) 690 WP_392891439.1 energy-coupling factor ABC transporter permease -
  ACF6ZU_RS08230 (ACF6ZU_08230) - 1777394..1778020 (+) 627 WP_392891440.1 DUF1780 domain-containing protein -

Sequence


Protein


Download         Length: 566 a.a.        Molecular weight: 62540.70 Da        Isoelectric Point: 6.2527

>NTDB_id=1060533 ACF6ZU_RS08195 WP_392891431.1 1771477..1773177(+) (pilB) [Pseudomonas migulae strain HY-2]
MNDIALSGLAKQLVLAELLTDKNAQQAYQQAQRQKLSLVSYLVQNKLVKSRQVAEIASEHFGMALLDLHCLDKESQPKGL
VSEKLVRQHHALPLWRRGNKLFVGVSDPTNHQAINDIQFSTGLNTEAILVEDDKLSDAIEKFFDSHSTGLEDMADVDLGG
LDIESIDDRNQDAIAGQDADDAPVVRFVHKMLLDAIKSGSSDLHFEPYEKTYRVRMRTDGMLREVAKPPIQLANRIAARL
KVMASLDISERRKPQDGRIKMRLSKSKSIDFRVNTLPTLWGEKVVIRILDPSSAQMGIDALGYEPGQKDLYMAALKQPQG
MILVTGPTGSGKTVSLYTGLNILNTVDINISTAEDPVEINMEGINQVNVNAKQGLGFPQALRSFLRQDPDVIMVGEIRDL
ETAEIAIKAAQTGHLVLSTLHTNSAAETLTRLHNMGIQGFNIATSVSLIIAQRLARKLCGECKKPIDIPREALIKEGFPE
ERIGTFTIYEPVGCDHCNGGYKGRVGIYEVVKNTADLQRLIMAEGNALEIDLQMRKDGFNDLRTSGLIKAMQGITSLEEI
NRVTKD

Nucleotide


Download         Length: 1701 bp        

>NTDB_id=1060533 ACF6ZU_RS08195 WP_392891431.1 1771477..1773177(+) (pilB) [Pseudomonas migulae strain HY-2]
ATGAATGACATCGCCCTTAGTGGCCTGGCCAAGCAATTGGTCCTGGCCGAACTGCTCACTGACAAAAACGCGCAACAGGC
GTATCAGCAAGCCCAGCGTCAGAAACTGTCCCTGGTCAGTTATCTGGTGCAGAACAAACTGGTGAAAAGCCGTCAGGTCG
CCGAGATCGCTTCGGAGCATTTCGGCATGGCGTTGCTCGACCTCCATTGCCTGGACAAAGAGTCGCAACCCAAAGGGCTG
GTCAGCGAAAAGCTGGTTCGCCAACACCACGCCCTGCCCCTGTGGCGGCGCGGCAACAAATTGTTTGTCGGGGTGTCCGA
CCCGACCAATCATCAGGCCATCAACGACATCCAGTTCAGCACCGGGCTGAATACCGAAGCCATCCTGGTGGAGGACGACA
AGCTCAGCGATGCCATCGAAAAGTTCTTCGACAGTCACAGCACCGGCCTGGAAGACATGGCCGATGTGGACCTCGGTGGG
CTCGACATCGAGTCGATCGACGACCGCAACCAGGACGCCATCGCCGGCCAGGACGCCGACGACGCGCCGGTGGTGCGCTT
CGTCCACAAGATGCTGCTCGACGCAATCAAGAGCGGCTCGTCCGACCTGCACTTCGAGCCCTACGAAAAAACCTACCGCG
TGCGGATGCGCACCGACGGCATGCTGCGTGAAGTCGCCAAGCCACCGATCCAGCTGGCCAACCGCATCGCCGCGCGCCTG
AAAGTCATGGCCAGCCTCGACATCTCCGAGCGGCGCAAACCCCAGGACGGGCGGATCAAGATGCGCCTGTCCAAGAGCAA
GTCGATCGACTTCCGGGTCAACACCCTGCCGACCCTGTGGGGCGAGAAAGTGGTGATCCGGATCCTCGATCCGTCGAGCG
CACAAATGGGCATCGACGCCCTCGGCTACGAGCCAGGACAGAAAGATTTGTACATGGCCGCGCTGAAGCAGCCGCAAGGA
ATGATTCTGGTGACCGGCCCCACCGGCTCGGGCAAGACCGTGTCGCTCTACACCGGCCTGAACATTCTCAACACCGTGGA
CATCAACATTTCCACCGCCGAAGACCCGGTGGAAATCAACATGGAAGGCATCAACCAGGTCAACGTCAACGCCAAGCAGG
GGTTGGGTTTTCCCCAGGCACTGCGCTCGTTCCTGCGTCAGGATCCGGACGTGATCATGGTCGGCGAGATCCGTGACCTG
GAAACCGCCGAGATCGCCATCAAGGCCGCCCAGACCGGTCACCTGGTGCTGTCGACCCTGCACACCAACAGCGCCGCGGA
AACCCTGACTCGCCTGCACAACATGGGCATCCAGGGCTTCAACATCGCGACCTCGGTCAGCCTGATCATCGCCCAGCGCC
TGGCGCGCAAGTTGTGCGGCGAATGCAAAAAACCCATCGACATCCCCCGCGAAGCGCTGATCAAGGAAGGCTTCCCCGAG
GAACGCATCGGCACGTTCACGATCTATGAGCCGGTCGGTTGCGATCACTGCAACGGTGGCTATAAAGGGCGCGTCGGGAT
TTATGAAGTGGTGAAGAACACCGCAGACTTGCAGCGCTTGATCATGGCCGAAGGCAACGCGCTGGAAATCGACCTTCAGA
TGCGCAAGGACGGTTTCAACGACCTGCGTACGTCGGGGCTGATCAAAGCCATGCAGGGCATTACCAGCCTTGAAGAAATC
AACCGGGTCACCAAGGACTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilB Acinetobacter baylyi ADP1

58.407

99.823

0.583

  pilB Acinetobacter baumannii D1279779

57.801

99.647

0.576

  pilB Legionella pneumophila strain ERS1305867

56.184

100

0.562

  pilB Vibrio cholerae strain A1552

50.262

100

0.509

  pilB Vibrio parahaemolyticus RIMD 2210633

50.624

99.117

0.502

  pilB Vibrio campbellii strain DS40M4

48.947

100

0.493

  pilF Neisseria gonorrhoeae MS11

49.378

99.47

0.491

  pilB Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

38.91

93.993

0.366

  pilF Thermus thermophilus HB27

36.042

100

0.36


Multiple sequence alignment