Detailed information
Overview
| Name | pilB | Type | Machinery gene |
| Locus tag | ACF6ZU_RS08195 | Genome accession | NZ_CP171224 |
| Coordinates | 1771477..1773177 (+) | Length | 566 a.a. |
| NCBI ID | WP_392891431.1 | Uniprot ID | - |
| Organism | Pseudomonas migulae strain HY-2 | ||
| Function | power the assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1766477..1778177
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACF6ZU_RS08175 (ACF6ZU_08175) | - | 1766652..1769600 (+) | 2949 | WP_392891425.1 | DUF748 domain-containing protein | - |
| ACF6ZU_RS08180 (ACF6ZU_08180) | - | 1769600..1769896 (+) | 297 | WP_392893747.1 | DUF2845 domain-containing protein | - |
| ACF6ZU_RS08185 (ACF6ZU_08185) | - | 1770179..1770532 (-) | 354 | WP_392891427.1 | BON domain-containing protein | - |
| ACF6ZU_RS08190 (ACF6ZU_08190) | - | 1770841..1771251 (-) | 411 | WP_392891429.1 | pilin | - |
| ACF6ZU_RS08195 (ACF6ZU_08195) | pilB | 1771477..1773177 (+) | 1701 | WP_392891431.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| ACF6ZU_RS08200 (ACF6ZU_08200) | pilC | 1773180..1774397 (+) | 1218 | WP_392891433.1 | type II secretion system F family protein | Machinery gene |
| ACF6ZU_RS08205 (ACF6ZU_08205) | pilD | 1774399..1775271 (+) | 873 | WP_392891434.1 | prepilin peptidase | Machinery gene |
| ACF6ZU_RS08210 (ACF6ZU_08210) | coaE | 1775268..1775891 (+) | 624 | WP_392891435.1 | dephospho-CoA kinase | - |
| ACF6ZU_RS08215 (ACF6ZU_08215) | yacG | 1775888..1776088 (+) | 201 | WP_392891436.1 | DNA gyrase inhibitor YacG | - |
| ACF6ZU_RS08220 (ACF6ZU_08220) | - | 1776098..1776313 (-) | 216 | WP_008033212.1 | hypothetical protein | - |
| ACF6ZU_RS08225 (ACF6ZU_08225) | - | 1776377..1777066 (-) | 690 | WP_392891439.1 | energy-coupling factor ABC transporter permease | - |
| ACF6ZU_RS08230 (ACF6ZU_08230) | - | 1777394..1778020 (+) | 627 | WP_392891440.1 | DUF1780 domain-containing protein | - |
Sequence
Protein
Download Length: 566 a.a. Molecular weight: 62540.70 Da Isoelectric Point: 6.2527
>NTDB_id=1060533 ACF6ZU_RS08195 WP_392891431.1 1771477..1773177(+) (pilB) [Pseudomonas migulae strain HY-2]
MNDIALSGLAKQLVLAELLTDKNAQQAYQQAQRQKLSLVSYLVQNKLVKSRQVAEIASEHFGMALLDLHCLDKESQPKGL
VSEKLVRQHHALPLWRRGNKLFVGVSDPTNHQAINDIQFSTGLNTEAILVEDDKLSDAIEKFFDSHSTGLEDMADVDLGG
LDIESIDDRNQDAIAGQDADDAPVVRFVHKMLLDAIKSGSSDLHFEPYEKTYRVRMRTDGMLREVAKPPIQLANRIAARL
KVMASLDISERRKPQDGRIKMRLSKSKSIDFRVNTLPTLWGEKVVIRILDPSSAQMGIDALGYEPGQKDLYMAALKQPQG
MILVTGPTGSGKTVSLYTGLNILNTVDINISTAEDPVEINMEGINQVNVNAKQGLGFPQALRSFLRQDPDVIMVGEIRDL
ETAEIAIKAAQTGHLVLSTLHTNSAAETLTRLHNMGIQGFNIATSVSLIIAQRLARKLCGECKKPIDIPREALIKEGFPE
ERIGTFTIYEPVGCDHCNGGYKGRVGIYEVVKNTADLQRLIMAEGNALEIDLQMRKDGFNDLRTSGLIKAMQGITSLEEI
NRVTKD
MNDIALSGLAKQLVLAELLTDKNAQQAYQQAQRQKLSLVSYLVQNKLVKSRQVAEIASEHFGMALLDLHCLDKESQPKGL
VSEKLVRQHHALPLWRRGNKLFVGVSDPTNHQAINDIQFSTGLNTEAILVEDDKLSDAIEKFFDSHSTGLEDMADVDLGG
LDIESIDDRNQDAIAGQDADDAPVVRFVHKMLLDAIKSGSSDLHFEPYEKTYRVRMRTDGMLREVAKPPIQLANRIAARL
KVMASLDISERRKPQDGRIKMRLSKSKSIDFRVNTLPTLWGEKVVIRILDPSSAQMGIDALGYEPGQKDLYMAALKQPQG
MILVTGPTGSGKTVSLYTGLNILNTVDINISTAEDPVEINMEGINQVNVNAKQGLGFPQALRSFLRQDPDVIMVGEIRDL
ETAEIAIKAAQTGHLVLSTLHTNSAAETLTRLHNMGIQGFNIATSVSLIIAQRLARKLCGECKKPIDIPREALIKEGFPE
ERIGTFTIYEPVGCDHCNGGYKGRVGIYEVVKNTADLQRLIMAEGNALEIDLQMRKDGFNDLRTSGLIKAMQGITSLEEI
NRVTKD
Nucleotide
Download Length: 1701 bp
>NTDB_id=1060533 ACF6ZU_RS08195 WP_392891431.1 1771477..1773177(+) (pilB) [Pseudomonas migulae strain HY-2]
ATGAATGACATCGCCCTTAGTGGCCTGGCCAAGCAATTGGTCCTGGCCGAACTGCTCACTGACAAAAACGCGCAACAGGC
GTATCAGCAAGCCCAGCGTCAGAAACTGTCCCTGGTCAGTTATCTGGTGCAGAACAAACTGGTGAAAAGCCGTCAGGTCG
CCGAGATCGCTTCGGAGCATTTCGGCATGGCGTTGCTCGACCTCCATTGCCTGGACAAAGAGTCGCAACCCAAAGGGCTG
GTCAGCGAAAAGCTGGTTCGCCAACACCACGCCCTGCCCCTGTGGCGGCGCGGCAACAAATTGTTTGTCGGGGTGTCCGA
CCCGACCAATCATCAGGCCATCAACGACATCCAGTTCAGCACCGGGCTGAATACCGAAGCCATCCTGGTGGAGGACGACA
AGCTCAGCGATGCCATCGAAAAGTTCTTCGACAGTCACAGCACCGGCCTGGAAGACATGGCCGATGTGGACCTCGGTGGG
CTCGACATCGAGTCGATCGACGACCGCAACCAGGACGCCATCGCCGGCCAGGACGCCGACGACGCGCCGGTGGTGCGCTT
CGTCCACAAGATGCTGCTCGACGCAATCAAGAGCGGCTCGTCCGACCTGCACTTCGAGCCCTACGAAAAAACCTACCGCG
TGCGGATGCGCACCGACGGCATGCTGCGTGAAGTCGCCAAGCCACCGATCCAGCTGGCCAACCGCATCGCCGCGCGCCTG
AAAGTCATGGCCAGCCTCGACATCTCCGAGCGGCGCAAACCCCAGGACGGGCGGATCAAGATGCGCCTGTCCAAGAGCAA
GTCGATCGACTTCCGGGTCAACACCCTGCCGACCCTGTGGGGCGAGAAAGTGGTGATCCGGATCCTCGATCCGTCGAGCG
CACAAATGGGCATCGACGCCCTCGGCTACGAGCCAGGACAGAAAGATTTGTACATGGCCGCGCTGAAGCAGCCGCAAGGA
ATGATTCTGGTGACCGGCCCCACCGGCTCGGGCAAGACCGTGTCGCTCTACACCGGCCTGAACATTCTCAACACCGTGGA
CATCAACATTTCCACCGCCGAAGACCCGGTGGAAATCAACATGGAAGGCATCAACCAGGTCAACGTCAACGCCAAGCAGG
GGTTGGGTTTTCCCCAGGCACTGCGCTCGTTCCTGCGTCAGGATCCGGACGTGATCATGGTCGGCGAGATCCGTGACCTG
GAAACCGCCGAGATCGCCATCAAGGCCGCCCAGACCGGTCACCTGGTGCTGTCGACCCTGCACACCAACAGCGCCGCGGA
AACCCTGACTCGCCTGCACAACATGGGCATCCAGGGCTTCAACATCGCGACCTCGGTCAGCCTGATCATCGCCCAGCGCC
TGGCGCGCAAGTTGTGCGGCGAATGCAAAAAACCCATCGACATCCCCCGCGAAGCGCTGATCAAGGAAGGCTTCCCCGAG
GAACGCATCGGCACGTTCACGATCTATGAGCCGGTCGGTTGCGATCACTGCAACGGTGGCTATAAAGGGCGCGTCGGGAT
TTATGAAGTGGTGAAGAACACCGCAGACTTGCAGCGCTTGATCATGGCCGAAGGCAACGCGCTGGAAATCGACCTTCAGA
TGCGCAAGGACGGTTTCAACGACCTGCGTACGTCGGGGCTGATCAAAGCCATGCAGGGCATTACCAGCCTTGAAGAAATC
AACCGGGTCACCAAGGACTGA
ATGAATGACATCGCCCTTAGTGGCCTGGCCAAGCAATTGGTCCTGGCCGAACTGCTCACTGACAAAAACGCGCAACAGGC
GTATCAGCAAGCCCAGCGTCAGAAACTGTCCCTGGTCAGTTATCTGGTGCAGAACAAACTGGTGAAAAGCCGTCAGGTCG
CCGAGATCGCTTCGGAGCATTTCGGCATGGCGTTGCTCGACCTCCATTGCCTGGACAAAGAGTCGCAACCCAAAGGGCTG
GTCAGCGAAAAGCTGGTTCGCCAACACCACGCCCTGCCCCTGTGGCGGCGCGGCAACAAATTGTTTGTCGGGGTGTCCGA
CCCGACCAATCATCAGGCCATCAACGACATCCAGTTCAGCACCGGGCTGAATACCGAAGCCATCCTGGTGGAGGACGACA
AGCTCAGCGATGCCATCGAAAAGTTCTTCGACAGTCACAGCACCGGCCTGGAAGACATGGCCGATGTGGACCTCGGTGGG
CTCGACATCGAGTCGATCGACGACCGCAACCAGGACGCCATCGCCGGCCAGGACGCCGACGACGCGCCGGTGGTGCGCTT
CGTCCACAAGATGCTGCTCGACGCAATCAAGAGCGGCTCGTCCGACCTGCACTTCGAGCCCTACGAAAAAACCTACCGCG
TGCGGATGCGCACCGACGGCATGCTGCGTGAAGTCGCCAAGCCACCGATCCAGCTGGCCAACCGCATCGCCGCGCGCCTG
AAAGTCATGGCCAGCCTCGACATCTCCGAGCGGCGCAAACCCCAGGACGGGCGGATCAAGATGCGCCTGTCCAAGAGCAA
GTCGATCGACTTCCGGGTCAACACCCTGCCGACCCTGTGGGGCGAGAAAGTGGTGATCCGGATCCTCGATCCGTCGAGCG
CACAAATGGGCATCGACGCCCTCGGCTACGAGCCAGGACAGAAAGATTTGTACATGGCCGCGCTGAAGCAGCCGCAAGGA
ATGATTCTGGTGACCGGCCCCACCGGCTCGGGCAAGACCGTGTCGCTCTACACCGGCCTGAACATTCTCAACACCGTGGA
CATCAACATTTCCACCGCCGAAGACCCGGTGGAAATCAACATGGAAGGCATCAACCAGGTCAACGTCAACGCCAAGCAGG
GGTTGGGTTTTCCCCAGGCACTGCGCTCGTTCCTGCGTCAGGATCCGGACGTGATCATGGTCGGCGAGATCCGTGACCTG
GAAACCGCCGAGATCGCCATCAAGGCCGCCCAGACCGGTCACCTGGTGCTGTCGACCCTGCACACCAACAGCGCCGCGGA
AACCCTGACTCGCCTGCACAACATGGGCATCCAGGGCTTCAACATCGCGACCTCGGTCAGCCTGATCATCGCCCAGCGCC
TGGCGCGCAAGTTGTGCGGCGAATGCAAAAAACCCATCGACATCCCCCGCGAAGCGCTGATCAAGGAAGGCTTCCCCGAG
GAACGCATCGGCACGTTCACGATCTATGAGCCGGTCGGTTGCGATCACTGCAACGGTGGCTATAAAGGGCGCGTCGGGAT
TTATGAAGTGGTGAAGAACACCGCAGACTTGCAGCGCTTGATCATGGCCGAAGGCAACGCGCTGGAAATCGACCTTCAGA
TGCGCAAGGACGGTTTCAACGACCTGCGTACGTCGGGGCTGATCAAAGCCATGCAGGGCATTACCAGCCTTGAAGAAATC
AACCGGGTCACCAAGGACTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilB | Acinetobacter baylyi ADP1 |
58.407 |
99.823 |
0.583 |
| pilB | Acinetobacter baumannii D1279779 |
57.801 |
99.647 |
0.576 |
| pilB | Legionella pneumophila strain ERS1305867 |
56.184 |
100 |
0.562 |
| pilB | Vibrio cholerae strain A1552 |
50.262 |
100 |
0.509 |
| pilB | Vibrio parahaemolyticus RIMD 2210633 |
50.624 |
99.117 |
0.502 |
| pilB | Vibrio campbellii strain DS40M4 |
48.947 |
100 |
0.493 |
| pilF | Neisseria gonorrhoeae MS11 |
49.378 |
99.47 |
0.491 |
| pilB | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
38.91 |
93.993 |
0.366 |
| pilF | Thermus thermophilus HB27 |
36.042 |
100 |
0.36 |