Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | ACF6ZU_RS08205 | Genome accession | NZ_CP171224 |
| Coordinates | 1774399..1775271 (+) | Length | 290 a.a. |
| NCBI ID | WP_392891434.1 | Uniprot ID | - |
| Organism | Pseudomonas migulae strain HY-2 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1769399..1780271
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACF6ZU_RS08180 (ACF6ZU_08180) | - | 1769600..1769896 (+) | 297 | WP_392893747.1 | DUF2845 domain-containing protein | - |
| ACF6ZU_RS08185 (ACF6ZU_08185) | - | 1770179..1770532 (-) | 354 | WP_392891427.1 | BON domain-containing protein | - |
| ACF6ZU_RS08190 (ACF6ZU_08190) | - | 1770841..1771251 (-) | 411 | WP_392891429.1 | pilin | - |
| ACF6ZU_RS08195 (ACF6ZU_08195) | pilB | 1771477..1773177 (+) | 1701 | WP_392891431.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| ACF6ZU_RS08200 (ACF6ZU_08200) | pilC | 1773180..1774397 (+) | 1218 | WP_392891433.1 | type II secretion system F family protein | Machinery gene |
| ACF6ZU_RS08205 (ACF6ZU_08205) | pilD | 1774399..1775271 (+) | 873 | WP_392891434.1 | prepilin peptidase | Machinery gene |
| ACF6ZU_RS08210 (ACF6ZU_08210) | coaE | 1775268..1775891 (+) | 624 | WP_392891435.1 | dephospho-CoA kinase | - |
| ACF6ZU_RS08215 (ACF6ZU_08215) | yacG | 1775888..1776088 (+) | 201 | WP_392891436.1 | DNA gyrase inhibitor YacG | - |
| ACF6ZU_RS08220 (ACF6ZU_08220) | - | 1776098..1776313 (-) | 216 | WP_008033212.1 | hypothetical protein | - |
| ACF6ZU_RS08225 (ACF6ZU_08225) | - | 1776377..1777066 (-) | 690 | WP_392891439.1 | energy-coupling factor ABC transporter permease | - |
| ACF6ZU_RS08230 (ACF6ZU_08230) | - | 1777394..1778020 (+) | 627 | WP_392891440.1 | DUF1780 domain-containing protein | - |
| ACF6ZU_RS08235 (ACF6ZU_08235) | - | 1778017..1778532 (+) | 516 | WP_392891442.1 | MOSC domain-containing protein | - |
| ACF6ZU_RS08240 (ACF6ZU_08240) | - | 1778601..1778774 (+) | 174 | WP_008028730.1 | DUF3094 domain-containing protein | - |
| ACF6ZU_RS08245 (ACF6ZU_08245) | - | 1778835..1780133 (+) | 1299 | WP_392891444.1 | NAD(P)/FAD-dependent oxidoreductase | - |
Sequence
Protein
Download Length: 290 a.a. Molecular weight: 32044.38 Da Isoelectric Point: 7.9253
>NTDB_id=1060535 ACF6ZU_RS08205 WP_392891434.1 1774399..1775271(+) (pilD) [Pseudomonas migulae strain HY-2]
MPLNEILTAYPLAFVALALVLGLLVGSFLNVVIWRLPKMLAREWRLQACEILGLPGETPQPTYNLMLPHSQCPHCGHRIR
AWENIPLLSYACLRGRCSSCAAPISKRYPLTELACGLLSAFIAWHFGFGWSAAMVLVLSWGLLAMSLIDAEHQLLPDVLV
LPLMWLGLIVNSFDLFVPLHEALWGAIAGYMALWSVFWLFKLITGKDGMGHGDFKLLALLGAWGGWQILPLTILLSSLVG
AVIGLILLRVRDAKTSTPIPFGPYLAIAGWIALLWGGQITDFYWQFVGLK
MPLNEILTAYPLAFVALALVLGLLVGSFLNVVIWRLPKMLAREWRLQACEILGLPGETPQPTYNLMLPHSQCPHCGHRIR
AWENIPLLSYACLRGRCSSCAAPISKRYPLTELACGLLSAFIAWHFGFGWSAAMVLVLSWGLLAMSLIDAEHQLLPDVLV
LPLMWLGLIVNSFDLFVPLHEALWGAIAGYMALWSVFWLFKLITGKDGMGHGDFKLLALLGAWGGWQILPLTILLSSLVG
AVIGLILLRVRDAKTSTPIPFGPYLAIAGWIALLWGGQITDFYWQFVGLK
Nucleotide
Download Length: 873 bp
>NTDB_id=1060535 ACF6ZU_RS08205 WP_392891434.1 1774399..1775271(+) (pilD) [Pseudomonas migulae strain HY-2]
ATGCCCCTGAATGAAATCCTGACAGCCTACCCGCTGGCCTTCGTCGCCCTTGCCCTGGTGCTCGGTTTGCTGGTCGGCAG
TTTCCTCAACGTGGTGATCTGGCGCCTGCCGAAAATGCTTGCCCGCGAGTGGCGCCTGCAAGCCTGTGAAATTCTCGGCT
TGCCCGGCGAAACACCGCAGCCAACCTACAACCTGATGCTGCCCCACTCCCAGTGTCCGCACTGCGGGCACCGGATCCGT
GCCTGGGAAAATATCCCGCTGCTCAGTTACGCGTGTTTGCGAGGACGCTGTTCAAGCTGCGCAGCGCCGATCAGCAAACG
CTACCCGTTGACCGAACTCGCCTGCGGCTTGCTGTCGGCGTTTATCGCCTGGCATTTCGGTTTCGGCTGGTCGGCGGCGA
TGGTGCTGGTGCTGAGCTGGGGCCTGTTGGCCATGAGCCTGATCGACGCCGAGCATCAACTGTTGCCGGATGTACTGGTG
TTGCCACTGATGTGGCTGGGGTTGATCGTCAACAGTTTCGACTTGTTCGTGCCTTTGCATGAGGCACTCTGGGGCGCAAT
AGCCGGCTATATGGCGCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGATCACCGGCAAGGACGGCATGGGTCACGGCGACT
TCAAGCTGCTGGCCCTGCTGGGGGCCTGGGGTGGCTGGCAGATTTTGCCGTTGACCATCCTGTTGTCGTCGCTGGTCGGC
GCCGTGATCGGTCTGATTTTGCTGCGGGTACGCGACGCAAAAACCTCGACGCCCATCCCTTTCGGCCCTTATCTGGCAAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGACTTCTATTGGCAGTTTGTCGGTTTGAAATGA
ATGCCCCTGAATGAAATCCTGACAGCCTACCCGCTGGCCTTCGTCGCCCTTGCCCTGGTGCTCGGTTTGCTGGTCGGCAG
TTTCCTCAACGTGGTGATCTGGCGCCTGCCGAAAATGCTTGCCCGCGAGTGGCGCCTGCAAGCCTGTGAAATTCTCGGCT
TGCCCGGCGAAACACCGCAGCCAACCTACAACCTGATGCTGCCCCACTCCCAGTGTCCGCACTGCGGGCACCGGATCCGT
GCCTGGGAAAATATCCCGCTGCTCAGTTACGCGTGTTTGCGAGGACGCTGTTCAAGCTGCGCAGCGCCGATCAGCAAACG
CTACCCGTTGACCGAACTCGCCTGCGGCTTGCTGTCGGCGTTTATCGCCTGGCATTTCGGTTTCGGCTGGTCGGCGGCGA
TGGTGCTGGTGCTGAGCTGGGGCCTGTTGGCCATGAGCCTGATCGACGCCGAGCATCAACTGTTGCCGGATGTACTGGTG
TTGCCACTGATGTGGCTGGGGTTGATCGTCAACAGTTTCGACTTGTTCGTGCCTTTGCATGAGGCACTCTGGGGCGCAAT
AGCCGGCTATATGGCGCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGATCACCGGCAAGGACGGCATGGGTCACGGCGACT
TCAAGCTGCTGGCCCTGCTGGGGGCCTGGGGTGGCTGGCAGATTTTGCCGTTGACCATCCTGTTGTCGTCGCTGGTCGGC
GCCGTGATCGGTCTGATTTTGCTGCGGGTACGCGACGCAAAAACCTCGACGCCCATCCCTTTCGGCCCTTATCTGGCAAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGACTTCTATTGGCAGTTTGTCGGTTTGAAATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio cholerae strain A1552 |
53.901 |
97.241 |
0.524 |
| pilD | Vibrio campbellii strain DS40M4 |
51.064 |
97.241 |
0.497 |
| pilD | Acinetobacter baumannii D1279779 |
49.265 |
93.793 |
0.462 |
| pilD | Acinetobacter nosocomialis M2 |
49.265 |
93.793 |
0.462 |
| pilD | Neisseria gonorrhoeae MS11 |
51.163 |
88.966 |
0.455 |