Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   ACF3MZ_RS24865 Genome accession   NZ_CP171108
Coordinates   5522112..5522609 (-) Length   165 a.a.
NCBI ID   WP_394047199.1    Uniprot ID   -
Organism   Cohnella sp. WGS1546     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5517112..5527609
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACF3MZ_RS24845 (ACF3MZ_24845) vanG 5517553..5518608 (-) 1056 WP_394047195.1 D-alanine--D-serine ligase VanG -
  ACF3MZ_RS24850 (ACF3MZ_24850) - 5518742..5520745 (-) 2004 WP_394047196.1 M28 family metallopeptidase -
  ACF3MZ_RS24855 (ACF3MZ_24855) - 5520869..5521225 (+) 357 WP_394047197.1 hypothetical protein -
  ACF3MZ_RS24860 (ACF3MZ_24860) rpsR 5521750..5522091 (-) 342 WP_394047198.1 30S ribosomal protein S18 -
  ACF3MZ_RS24865 (ACF3MZ_24865) ssbA 5522112..5522609 (-) 498 WP_394047199.1 single-stranded DNA-binding protein Machinery gene
  ACF3MZ_RS24870 (ACF3MZ_24870) rpsF 5522679..5522966 (-) 288 WP_394047200.1 30S ribosomal protein S6 -
  ACF3MZ_RS24875 (ACF3MZ_24875) - 5523319..5524314 (+) 996 WP_394047201.1 aldo/keto reductase -
  ACF3MZ_RS24880 (ACF3MZ_24880) - 5524362..5524553 (+) 192 WP_394047202.1 YjzC family protein -
  ACF3MZ_RS24885 (ACF3MZ_24885) - 5524851..5526518 (-) 1668 WP_394047203.1 PucR family transcriptional regulator -
  ACF3MZ_RS24890 (ACF3MZ_24890) - 5526530..5526673 (-) 144 WP_394047204.1 hypothetical protein -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 17782.56 Da        Isoelectric Point: 4.8453

>NTDB_id=1060083 ACF3MZ_RS24865 WP_394047199.1 5522112..5522609(-) (ssbA) [Cohnella sp. WGS1546]
MLNRVILIGRLTRDPELRYTPQGVAVAQFTLAVDRPFGNREEREADFIPIVTWRQLAETCANYLRKGRLAAVEGRIQVRN
YENNEGRRVYVTEVIADNVRFLESPNREGGGQGSGEGLGGGSGAGAGGGGYGGGNRSSGPRGNNNSDPFADDGRPIDISD
DDLPF

Nucleotide


Download         Length: 498 bp        

>NTDB_id=1060083 ACF3MZ_RS24865 WP_394047199.1 5522112..5522609(-) (ssbA) [Cohnella sp. WGS1546]
ATGCTGAACCGAGTCATTCTCATAGGGCGCCTGACGAGGGATCCCGAATTGCGTTACACGCCCCAAGGCGTGGCCGTTGC
TCAATTTACTTTGGCGGTAGACCGTCCGTTCGGCAATCGCGAGGAACGGGAAGCGGATTTTATCCCGATCGTAACTTGGA
GACAGCTCGCCGAGACGTGCGCCAATTACCTTCGCAAAGGTCGTTTGGCTGCCGTGGAGGGCCGCATTCAGGTGCGCAAT
TACGAGAATAACGAAGGCCGGCGCGTGTACGTGACGGAAGTGATCGCCGACAACGTCCGATTCCTGGAATCGCCGAACCG
CGAGGGCGGCGGGCAAGGAAGCGGCGAAGGATTAGGCGGCGGCTCCGGCGCGGGCGCGGGCGGCGGCGGATACGGAGGCG
GCAACCGCAGCTCCGGACCCCGCGGCAACAACAACAGCGATCCCTTCGCCGATGACGGGCGACCGATAGATATATCGGAC
GATGATTTGCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

58.721

100

0.612
  ssb Latilactobacillus sakei subsp. sakei 23K

49.412

100

0.509
  ssbB Bacillus subtilis subsp. subtilis str. 168

55.357

67.879

0.376
  ssb Neisseria meningitidis MC58

35.632

100

0.376
  ssb Glaesserella parasuis strain SC1401

33.889

100

0.37
  ssb Neisseria gonorrhoeae MS11

35.057

100

0.37

Multiple sequence alignment