Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   ACFKHK_RS06960 Genome accession   NZ_CP170760
Coordinates   1332197..1332808 (-) Length   203 a.a.
NCBI ID   WP_274505943.1    Uniprot ID   -
Organism   Streptococcus parasuis strain FZ2     
Function   degradation of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1327197..1337808
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFKHK_RS06935 - 1327576..1328340 (-) 765 WP_171989730.1 ABC transporter ATP-binding protein -
  ACFKHK_RS06940 - 1328340..1329287 (-) 948 WP_171989731.1 branched-chain amino acid ABC transporter permease -
  ACFKHK_RS06945 - 1329290..1330177 (-) 888 WP_171989732.1 branched-chain amino acid ABC transporter permease -
  ACFKHK_RS06950 - 1330458..1331627 (-) 1170 WP_239604042.1 ABC transporter substrate-binding protein -
  ACFKHK_RS06955 - 1331793..1332080 (-) 288 WP_174845760.1 DUF2129 domain-containing protein -
  ACFKHK_RS06960 clpP 1332197..1332808 (-) 612 WP_274505943.1 ATP-dependent Clp protease proteolytic subunit Regulator
  ACFKHK_RS06965 upp 1333169..1333798 (-) 630 WP_024391947.1 uracil phosphoribosyltransferase -
  ACFKHK_RS06970 - 1333878..1335494 (-) 1617 WP_392461501.1 alpha-glucosidase -
  ACFKHK_RS06975 - 1335834..1336673 (+) 840 Protein_1340 AraC family transcriptional regulator -

Sequence

Protein


Download         Length: 203 a.a.        Molecular weight: 22453.85 Da        Isoelectric Point: 7.3122

>NTDB_id=1059271 ACFKHK_RS06960 WP_274505943.1 1332197..1332808(-) (clpP) [Streptococcus parasuis strain FZ2]
MSKRSKFMIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGQVEDNMANSIIAQLLFLDAQDPTKDIYLYVNTPGGSVSAGL
AIVDTMNFIKADVQTIVMGTAASMGTIIASSGTKGKRFMLPNAEYLIHQPMGGTGGGTQQTDMAIAAEHLLKTRNKLEKI
LADNSGKTVKQIHKDAERDYWMSAEETLAYGFIDQIMYDTKTK

Nucleotide


Download         Length: 612 bp        

>NTDB_id=1059271 ACFKHK_RS06960 WP_274505943.1 1332197..1332808(-) (clpP) [Streptococcus parasuis strain FZ2]
ATCTCGAAAAGGAGTAAATTTATGATTCCAGTAGTTATTGAACAAACTAGTCGCGGTGAGCGCTCGTATGATATTTATTC
ACGTTTGCTGAAAGACCGCATCATTATGTTGACAGGTCAGGTTGAGGACAATATGGCCAATTCGATTATTGCCCAATTGC
TTTTCCTAGATGCACAAGATCCAACAAAAGATATTTATCTCTATGTAAATACACCAGGGGGTTCTGTTTCTGCAGGTCTT
GCCATCGTGGATACAATGAACTTCATTAAAGCAGACGTACAGACAATTGTAATGGGTACTGCAGCAAGTATGGGAACAAT
CATTGCTTCAAGTGGTACAAAAGGCAAACGTTTCATGCTTCCTAATGCAGAATACCTGATTCACCAACCAATGGGAGGCA
CTGGTGGTGGTACTCAGCAAACTGACATGGCAATTGCAGCAGAACACCTCTTAAAAACTCGTAACAAGTTAGAAAAAATC
TTGGCGGACAATTCTGGTAAGACAGTCAAACAAATCCATAAGGATGCAGAACGTGACTATTGGATGTCTGCTGAAGAAAC
CTTGGCATACGGCTTTATCGACCAAATTATGTACGATACAAAGACTAAGTAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(18-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Streptococcus pyogenes MGAS315

91.327

96.552

0.882
  clpP Streptococcus pyogenes JRS4

91.327

96.552

0.882
  clpP Streptococcus mutans UA159

86.765

100

0.872
  clpP Streptococcus thermophilus LMD-9

87.755

96.552

0.847
  clpP Streptococcus thermophilus LMG 18311

87.755

96.552

0.847
  clpP Streptococcus pneumoniae Rx1

89.474

93.596

0.837
  clpP Streptococcus pneumoniae D39

89.474

93.596

0.837
  clpP Streptococcus pneumoniae R6

89.474

93.596

0.837
  clpP Streptococcus pneumoniae TIGR4

89.474

93.596

0.837
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

83.756

97.044

0.813
  clpP Lactococcus lactis subsp. cremoris KW2

83.249

97.044

0.808
  clpP Bacillus subtilis subsp. subtilis str. 168

57.653

96.552

0.557
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.421

93.596

0.547

Multiple sequence alignment