Detailed information
Bioinformatically predicted
Overview
| Name | comEA | Type | Machinery gene |
| Locus tag | ACFE3T_RS04270 | Genome accession | NZ_CP170742 |
| Coordinates | 874332..874652 (-) | Length | 106 a.a. |
| NCBI ID | WP_099994235.1 | Uniprot ID | - |
| Organism | Aeromonas salmonicida strain XN-7 | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 869332..879652
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACFE3T_RS04250 (ACFE3T_04250) | - | 870107..870571 (+) | 465 | WP_197665895.1 | response regulator | - |
| ACFE3T_RS04255 (ACFE3T_04255) | - | 870667..871638 (+) | 972 | WP_234595715.1 | response regulator | - |
| ACFE3T_RS04260 (ACFE3T_04260) | - | 871714..873111 (-) | 1398 | WP_017412884.1 | peptide MFS transporter | - |
| ACFE3T_RS04265 (ACFE3T_04265) | galU | 873325..874236 (-) | 912 | WP_392400439.1 | UTP--glucose-1-phosphate uridylyltransferase GalU | - |
| ACFE3T_RS04270 (ACFE3T_04270) | comEA | 874332..874652 (-) | 321 | WP_099994235.1 | ComEA family DNA-binding protein | Machinery gene |
| ACFE3T_RS04275 (ACFE3T_04275) | cysQ | 874819..875574 (+) | 756 | WP_234579288.1 | 3'(2'),5'-bisphosphate nucleotidase CysQ | - |
| ACFE3T_RS04280 (ACFE3T_04280) | - | 875656..875952 (-) | 297 | WP_059114085.1 | YciI family protein | - |
| ACFE3T_RS04285 (ACFE3T_04285) | - | 875979..876530 (-) | 552 | WP_005318063.1 | septation protein A | - |
| ACFE3T_RS04290 (ACFE3T_04290) | - | 876616..878151 (-) | 1536 | WP_219592951.1 | aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme | - |
| ACFE3T_RS04295 (ACFE3T_04295) | - | 878376..879011 (+) | 636 | WP_021140622.1 | hemolysin III family protein | - |
Sequence
Protein
Download Length: 106 a.a. Molecular weight: 11201.04 Da Isoelectric Point: 9.6863
>NTDB_id=1059081 ACFE3T_RS04270 WP_099994235.1 874332..874652(-) (comEA) [Aeromonas salmonicida strain XN-7]
MNYKTLTATLLLSCLPLLSQPLLAADKSAAKPATTVTTAKESGKVNLNTASINELTALKGIGEKKAQAIVDFREKQGKFT
TVEQLADVSGIGPATLEANRDMIIVK
MNYKTLTATLLLSCLPLLSQPLLAADKSAAKPATTVTTAKESGKVNLNTASINELTALKGIGEKKAQAIVDFREKQGKFT
TVEQLADVSGIGPATLEANRDMIIVK
Nucleotide
Download Length: 321 bp
>NTDB_id=1059081 ACFE3T_RS04270 WP_099994235.1 874332..874652(-) (comEA) [Aeromonas salmonicida strain XN-7]
ATGAACTATAAGACCCTGACCGCCACCCTGCTGCTGAGCTGCCTGCCCCTGTTGAGCCAGCCTTTGCTGGCTGCCGACAA
GTCGGCAGCCAAGCCAGCGACCACAGTCACCACCGCCAAGGAGAGTGGCAAGGTGAACCTGAATACGGCCAGTATCAATG
AGTTAACTGCCCTCAAGGGGATCGGAGAGAAGAAGGCGCAGGCCATCGTCGATTTTCGTGAGAAGCAGGGAAAATTCACC
ACGGTTGAACAACTGGCGGATGTCAGCGGCATAGGGCCGGCAACCTTGGAAGCAAATCGGGACATGATCATCGTCAAATA
G
ATGAACTATAAGACCCTGACCGCCACCCTGCTGCTGAGCTGCCTGCCCCTGTTGAGCCAGCCTTTGCTGGCTGCCGACAA
GTCGGCAGCCAAGCCAGCGACCACAGTCACCACCGCCAAGGAGAGTGGCAAGGTGAACCTGAATACGGCCAGTATCAATG
AGTTAACTGCCCTCAAGGGGATCGGAGAGAAGAAGGCGCAGGCCATCGTCGATTTTCGTGAGAAGCAGGGAAAATTCACC
ACGGTTGAACAACTGGCGGATGTCAGCGGCATAGGGCCGGCAACCTTGGAAGCAAATCGGGACATGATCATCGTCAAATA
G
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comEA | Vibrio cholerae strain A1552 |
51.818 |
100 |
0.538 |
| comEA | Vibrio cholerae C6706 |
51.818 |
100 |
0.538 |
| comE1/comEA | Haemophilus influenzae Rd KW20 |
44.144 |
100 |
0.462 |
| comEA | Vibrio parahaemolyticus RIMD 2210633 |
46.392 |
91.509 |
0.425 |
| comEA/comE1 | Glaesserella parasuis strain SC1401 |
63.492 |
59.434 |
0.377 |
| comEA | Legionella pneumophila str. Paris |
40.816 |
92.453 |
0.377 |
| comEA | Legionella pneumophila strain ERS1305867 |
40.816 |
92.453 |
0.377 |
| comEA/celA/cilE | Streptococcus mitis NCTC 12261 |
51.316 |
71.698 |
0.368 |