Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/celA/cilE   Type   Machinery gene
Locus tag   DK41_RS04260 Genome accession   NZ_CP007570
Coordinates   829203..829856 (+) Length   217 a.a.
NCBI ID   WP_000461748.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain GBS1-NY     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 824203..834856
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DK41_RS04235 (DK41_04300) - 824370..825200 (+) 831 WP_000735512.1 MetQ/NlpA family ABC transporter substrate-binding protein -
  DK41_RS04240 (DK41_04305) - 825435..827021 (+) 1587 WP_000673086.1 DEAD/DEAH box helicase -
  DK41_RS04245 (DK41_04310) - 827206..827472 (-) 267 WP_000598736.1 GIY-YIG nuclease family protein -
  DK41_RS04250 (DK41_04315) - 827465..828229 (-) 765 WP_000567428.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  DK41_RS04255 (DK41_04320) - 828364..829104 (+) 741 WP_000500220.1 1-acyl-sn-glycerol-3-phosphate acyltransferase -
  DK41_RS04260 (DK41_04325) comEA/celA/cilE 829203..829856 (+) 654 WP_000461748.1 helix-hairpin-helix domain-containing protein Machinery gene
  DK41_RS04265 (DK41_04330) comEC/celB 829840..832077 (+) 2238 WP_000939910.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  DK41_RS04270 (DK41_04335) - 832203..833012 (+) 810 WP_000153220.1 Cof-type HAD-IIB family hydrolase -
  DK41_RS04275 (DK41_04340) - 833023..833967 (+) 945 WP_000200832.1 LacI family DNA-binding transcriptional regulator -

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 23740.09 Da        Isoelectric Point: 9.1860

>NTDB_id=105812 DK41_RS04260 WP_000461748.1 829203..829856(+) (comEA/celA/cilE) [Streptococcus agalactiae strain GBS1-NY]
MFEIVLEKIKSHKWETTGIIVGLLLFGILGLNHFGTHYKEDDLNINLEKKVSTITEKKVPMISHVKDKVSNQVTVDVKGA
VNHPGVYSLPSQSRVTDAIKRAGGLSNLADSKSVNLAQKLQDETVIYVAQKGEKITVVEEEKANNIATQGNSKGKINLNK
ADLSSLQTISGVGAKRAQDILDYRDSQGGFKTIDDLKNVSGIGEKTLEKLRQDVTID

Nucleotide


Download         Length: 654 bp        

>NTDB_id=105812 DK41_RS04260 WP_000461748.1 829203..829856(+) (comEA/celA/cilE) [Streptococcus agalactiae strain GBS1-NY]
ATGTTTGAAATAGTATTGGAAAAAATTAAATCGCATAAATGGGAGACAACAGGAATTATTGTAGGACTCTTATTATTTGG
AATTTTGGGTTTAAATCATTTTGGCACTCATTATAAAGAAGACGATTTAAATATTAATTTAGAGAAAAAAGTATCAACTA
TAACAGAAAAAAAGGTACCAATGATTAGTCACGTCAAAGATAAAGTATCTAATCAAGTAACGGTTGACGTAAAAGGGGCA
GTCAATCATCCAGGTGTTTATAGTTTGCCTTCTCAAAGTCGTGTAACAGATGCGATTAAGCGTGCAGGTGGACTAAGCAA
TCTCGCTGATAGTAAATCTGTTAATCTAGCACAGAAATTACAAGATGAGACGGTTATCTATGTTGCTCAAAAAGGTGAAA
AAATAACTGTTGTGGAAGAGGAGAAAGCAAATAATATCGCCACTCAGGGAAATAGTAAGGGGAAAATTAATCTTAATAAA
GCAGATTTATCAAGTCTTCAGACCATATCAGGCGTTGGAGCTAAAAGAGCTCAAGATATTTTAGATTATCGTGATAGTCA
AGGTGGTTTTAAAACTATTGATGACCTCAAAAACGTATCAGGTATTGGTGAGAAAACACTAGAAAAATTACGTCAAGATG
TTACAATTGACTAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(153-215)

SLBB domain (SLBB)

(75-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/celA/cilE Streptococcus pneumoniae TIGR4

44.595

100

0.456
  comEA/celA/cilE Streptococcus mitis SK321

44.144

100

0.452
  comEA/celA/cilE Streptococcus pneumoniae Rx1

43.694

100

0.447
  comEA/celA/cilE Streptococcus pneumoniae D39

43.694

100

0.447
  comEA/celA/cilE Streptococcus pneumoniae R6

43.694

100

0.447
  comEA/celA/cilE Streptococcus mitis NCTC 12261

43.243

100

0.442
  comEA Lactococcus lactis subsp. cremoris KW2

39.013

100

0.401
  comEA Streptococcus thermophilus LMD-9

54.545

70.968

0.387

Multiple sequence alignment