Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ACFJI2_RS01485 Genome accession   NZ_CP170549
Coordinates   322567..323790 (-) Length   407 a.a.
NCBI ID   WP_107876121.1    Uniprot ID   -
Organism   Pseudoduganella sp. UC29_71     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 317567..328790
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFJI2_RS01455 (ACFJI2_01455) - 317794..318573 (+) 780 WP_377703437.1 3-hydroxybutyrate dehydrogenase -
  ACFJI2_RS01460 (ACFJI2_01460) - 318702..319283 (+) 582 WP_377703438.1 MEDS domain-containing protein -
  ACFJI2_RS01465 (ACFJI2_01465) - 319467..320063 (-) 597 WP_377703439.1 NADPH-dependent F420 reductase -
  ACFJI2_RS01470 (ACFJI2_01470) - 320092..320859 (-) 768 WP_377703440.1 SDR family NAD(P)-dependent oxidoreductase -
  ACFJI2_RS01475 (ACFJI2_01475) - 320872..321606 (-) 735 WP_377703441.1 SDR family NAD(P)-dependent oxidoreductase -
  ACFJI2_RS01480 (ACFJI2_01480) - 321730..322311 (+) 582 WP_377703442.1 TetR/AcrR family transcriptional regulator -
  ACFJI2_RS01485 (ACFJI2_01485) pilC 322567..323790 (-) 1224 WP_107876121.1 type II secretion system F family protein Machinery gene
  ACFJI2_RS01490 (ACFJI2_01490) pilB 323801..325531 (-) 1731 WP_377703443.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACFJI2_RS01495 (ACFJI2_01495) - 325654..326931 (-) 1278 WP_107876125.1 HlyC/CorC family transporter -
  ACFJI2_RS01500 (ACFJI2_01500) - 327120..327998 (+) 879 WP_377703444.1 helix-turn-helix domain-containing protein -
  ACFJI2_RS01505 (ACFJI2_01505) - 328079..328597 (+) 519 WP_377703445.1 NuoB/complex I 20 kDa subunit family protein -

Sequence

Protein


Download         Length: 407 a.a.        Molecular weight: 44368.23 Da        Isoelectric Point: 9.7545

>NTDB_id=1057912 ACFJI2_RS01485 WP_107876121.1 322567..323790(-) (pilC) [Pseudoduganella sp. UC29_71]
MATTSTPGNPIKESVFAWEGKDKTGKTVRGELRAGGEAVVNVTLRRQGIMVTKVKKKVYRSGKKVTDKDISLFTRQLATM
MKAGVPLLQSFDIVGKGHSNPSVSKLVMDLRADIETGTSLNQAFRKFPLYFDPLFCNLVGAGEQAGILEDLLTRLAIYKE
KTLAMKAKIKSALTYPVSILGVAFIVTAVIMIWVVPAFKEVFASFGADLPAPTLAVMAISEFFVSYWYLIFGGLFGSLYF
FFQAWKRSPQVQRFMDVTLLKLPIFGEVIRKATIARWTRTLSTMFAAGVPLVESLDSVGGASGNIVYLEATRRIQKEVST
GTSLTVAMQNADVFPNMVTQMVSIGEESGSLDAMLGKVADFFEDEVDEAVASLSSLMEPLIMVILGVLIGGLVIAMYLPI
FKLGSVV

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=1057912 ACFJI2_RS01485 WP_107876121.1 322567..323790(-) (pilC) [Pseudoduganella sp. UC29_71]
ATGGCCACTACGAGCACTCCGGGCAACCCCATCAAGGAATCGGTCTTCGCCTGGGAAGGCAAGGACAAAACCGGCAAGAC
CGTGCGCGGCGAACTGCGCGCCGGCGGCGAGGCGGTGGTCAACGTGACCTTGCGGCGCCAGGGCATCATGGTGACCAAGG
TGAAGAAGAAGGTCTACCGCAGCGGCAAGAAAGTCACCGACAAGGACATCTCGCTGTTTACGCGCCAGCTGGCCACCATG
ATGAAGGCCGGCGTGCCGCTGCTGCAATCGTTCGACATTGTCGGCAAGGGGCACTCCAATCCCTCCGTGTCCAAGCTGGT
GATGGATTTGCGCGCCGACATCGAGACCGGCACCAGCCTGAACCAGGCCTTCCGCAAGTTCCCGCTGTACTTCGACCCGC
TGTTCTGCAACCTGGTGGGCGCCGGCGAACAGGCCGGCATCCTGGAAGACCTGCTGACGCGGCTGGCCATCTACAAGGAA
AAGACCCTGGCCATGAAGGCCAAGATCAAGTCCGCGCTGACCTATCCGGTGTCCATCCTGGGCGTGGCCTTCATCGTCAC
CGCCGTCATCATGATCTGGGTGGTGCCGGCGTTCAAGGAGGTGTTCGCCAGCTTCGGCGCCGACCTGCCCGCGCCCACCC
TGGCGGTGATGGCCATTTCCGAATTCTTCGTGTCCTACTGGTATCTGATTTTCGGCGGCCTGTTCGGCTCGCTCTACTTC
TTCTTCCAGGCCTGGAAGCGTTCGCCGCAGGTGCAGCGCTTCATGGACGTGACCCTGCTCAAGCTGCCCATCTTCGGCGA
GGTGATCCGCAAGGCCACCATCGCGCGCTGGACGCGCACCTTGTCGACCATGTTCGCGGCCGGCGTGCCGCTGGTGGAGT
CGCTCGACTCGGTGGGCGGCGCCTCCGGCAACATCGTCTACCTGGAAGCGACGCGCCGCATCCAGAAGGAAGTGAGCACC
GGCACCAGCCTGACGGTGGCCATGCAGAACGCGGACGTGTTCCCCAACATGGTGACGCAGATGGTGTCCATCGGCGAAGA
GTCCGGCTCGCTGGACGCCATGCTGGGCAAGGTGGCCGACTTCTTCGAGGACGAAGTGGACGAGGCCGTGGCCTCGCTGT
CCAGCTTGATGGAGCCGCTGATCATGGTGATCCTGGGCGTGCTGATCGGCGGCCTGGTGATTGCCATGTACCTGCCCATC
TTCAAGCTCGGCTCGGTGGTGTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(73-196)

Type II secretion system (T2SS), protein F (T2SSF)

(277-399)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

55

98.28

0.541
  pilC Legionella pneumophila strain ERS1305867

53.788

97.297

0.523
  pilG Neisseria gonorrhoeae MS11

52.897

97.543

0.516
  pilG Neisseria meningitidis 44/76-A

52.645

97.543

0.514
  pilC Acinetobacter baumannii D1279779

51.637

97.543

0.504
  pilC Acinetobacter baylyi ADP1

50.754

97.789

0.496
  pilC Vibrio cholerae strain A1552

39.552

98.771

0.391
  pilC Vibrio campbellii strain DS40M4

39.547

97.543

0.386

Multiple sequence alignment